H
Helge Dzierzon
Researcher at Plant & Food Research
Publications - 5
Citations - 423
Helge Dzierzon is an academic researcher from Plant & Food Research. The author has contributed to research in topics: Genome & Gene prediction. The author has an hindex of 4, co-authored 5 publications receiving 315 citations.
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Journal ArticleDOI
The Draft Genome Sequence of European Pear (Pyrus communis L. ‘Bartlett’)
David Chagné,Ross N. Crowhurst,Massimo Pindo,Amali H. Thrimawithana,Cecilia H. Deng,Hilary S. Ireland,Mark Fiers,Helge Dzierzon,Alessandro Cestaro,Paolo Fontana,Luca Bianco,Ashley Lu,Roy Storey,Mareike Knäbel,Munazza Saeed,Sara Montanari,Yoon Kyeong Kim,Daniela Nicolini,Simone Larger,Erika Stefani,Andrew C. Allan,Judith H. Bowen,Isaac Harvey,Jason W. Johnston,Mickael Malnoy,Michela Troggio,Laure Perchepied,Greg Sawyer,Claudia Wiedow,Kyungho Won,Roberto Viola,Roger P. Hellens,Lester Brewer,Vincent G. M. Bus,Robert J. Schaffer,Susan E. Gardiner,Riccardo Velasco +36 more
TL;DR: Analysis of the expansin gene family provided an example of the quality of the gene prediction and an insight into the relationships among one class of cell wall related genes that control fruit softening in both European pear and apple.
Journal ArticleDOI
A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
Sarah M. Pilkington,Ross N. Crowhurst,Elena Hilario,Simona Nardozza,Lena G. Fraser,Yongyan Peng,Yongyan Peng,Kularajathevan Gunaseelan,Robert M. Simpson,Jibran Tahir,Simon C. Deroles,Kerry Robert Templeton,Zhiwei Luo,Marcus Davy,Canhong Cheng,Mark A McNeilage,Davide Scaglione,Yifei Liu,Qiong Zhang,P. M. Datson,Nihal De Silva,Susan E. Gardiner,H. Bassett,David Chagné,John McCallum,Helge Dzierzon,Cecilia H. Deng,Yen-Yi Wang,Lorna Barron,Kelvina I. Manako,Judith H. Bowen,Toshi Foster,Zoe A. Erridge,Heather R. Tiffin,Chethi N. Waite,Kevin M. Davies,Ella R. P. Grierson,William A. Laing,Rebecca Kirk,Xiuyin Chen,Marion Wood,Mirco Montefiori,David A. Brummell,Kathy E. Schwinn,Andrew Catanach,Christina G. Fullerton,Dawei Li,Sathiyamoorthy Meiyalaghan,Niels J. Nieuwenhuizen,Nicola C. Read,Roneel Prakash,Donald A. Hunter,Huaibi Zhang,Marian J. McKenzie,Mareike Knäbel,Alastair Harris,Andrew C. Allan,Andrew C. Allan,Andrew P. Gleave,Angela Chen,Bart J. Janssen,Blue Plunkett,Charles Ampomah-Dwamena,Charlotte Voogd,Davin Leif,Davin Leif,Declan J. Lafferty,Edwige J. F. Souleyre,Erika Varkonyi-Gasic,Francesco Gambi,Jenny Hanley,Jia-Long Yao,Joey Cheung,Karine M. David,Ben Warren,K.B. Marsh,Kimberley C. Snowden,Kui Lin-Wang,Lara Brian,Marcela Martínez-Sánchez,Mindy Y. Wang,Nadeesha R. Ileperuma,Nikolai Macnee,Robert Campin,Peter A. McAtee,Revel S.M. Drummond,Richard V. Espley,Hilary S. Ireland,Rongmei Wu,Ross G. Atkinson,Sakuntala Karunairetnam,Sean Bulley,Shayhan Chunkath,Zac Hanley,Roy Storey,Amali H. Thrimawithana,Susan Thomson,Charles David,Raffaele Testolin,Hongwen Huang,Roger P. Hellens,Robert J. Schaffer,Robert J. Schaffer +102 more
TL;DR: The use of the manual annotation tool WebApollo facilitated manual checking and correction of gene models enabling improvement of computational prediction, especially relevant for certain types of gene families such as the EXPANSIN like genes.
Journal ArticleDOI
Chromosome-scale scaffolding of the black raspberry (Rubus occidentalis L.) genome based on chromatin interaction data
Rubina Jibran,Helge Dzierzon,Nahla V. Bassil,Jill M. Bushakra,Patrick P. Edger,Shawn T. Sullivan,Chad E. Finn,Michael Dossett,Kelly J. Vining,Robert VanBuren,Todd C. Mockler,Ivan Liachko,Kevin M. Davies,Toshi Foster,David Chagné +14 more
TL;DR: It is concluded that PGA is a cost-effective and rapid method of generating chromosome-scale assemblies from Illumina short-read sequencing data.
A draft genome sequence of European pear (Pyrus communis L. ‘Bartlett’)
Susan E. Gardiner,R.N. Crowhurst,Massimo Pindo,Amali H. Thrimawithana,Roy Storey,Cecilia H. Deng,Helge Dzierzon,Mark Fiers,A. Lu,Sara Montanari,Mareike Knaebel,Munazza Saeed,Y.K. Kim,I. Ireland,Andrew C. Allan,Robert J. Schaffer,A. Cestaro,Lester Brewer,Riccardo Velasco,David Chagné +19 more
TL;DR: In this article, a draft assembly of the genome of European pear (Pyrus communis) "Bartlett" is presented, which contains 142,083 scaffolds greater than 499 bases (maximum scaffold length of 1.2 Mb) and covers a total of 577.3 Mb.
Journal ArticleDOI
Two Loci, RiAF3 and RiAF4, Contribute to the Annual-Fruiting Trait in Rubus.
Rubina Jibran,Jessica Spencer,Gina E. Fernandez,Amparo Monfort,Mourad Mnejja,Helge Dzierzon,Jibran Tahir,Kevin M. Davies,David Chagné,Toshi Foster +9 more
TL;DR: Trait mapping in a red raspberry population segregating for AF indicated that AF is controlled by two newly identified loci (RiAF3 and RiAF4) located on Rubus linkage groups (LGs) 3 and 4, and confirmed that AF in Rubus is regulated by loci on LG 3 and4, in addition to a previously reported locus on LG 7.