M
Mareike Knäbel
Researcher at Plant & Food Research
Publications - 12
Citations - 552
Mareike Knäbel is an academic researcher from Plant & Food Research. The author has contributed to research in topics: PEAR & Population. The author has an hindex of 8, co-authored 11 publications receiving 425 citations. Previous affiliations of Mareike Knäbel include University of Auckland.
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Journal ArticleDOI
The Draft Genome Sequence of European Pear (Pyrus communis L. ‘Bartlett’)
David Chagné,Ross N. Crowhurst,Massimo Pindo,Amali H. Thrimawithana,Cecilia H. Deng,Hilary S. Ireland,Mark Fiers,Helge Dzierzon,Alessandro Cestaro,Paolo Fontana,Luca Bianco,Ashley Lu,Roy Storey,Mareike Knäbel,Munazza Saeed,Sara Montanari,Yoon Kyeong Kim,Daniela Nicolini,Simone Larger,Erika Stefani,Andrew C. Allan,Judith H. Bowen,Isaac Harvey,Jason W. Johnston,Mickael Malnoy,Michela Troggio,Laure Perchepied,Greg Sawyer,Claudia Wiedow,Kyungho Won,Roberto Viola,Roger P. Hellens,Lester Brewer,Vincent G. M. Bus,Robert J. Schaffer,Susan E. Gardiner,Riccardo Velasco +36 more
TL;DR: Analysis of the expansin gene family provided an example of the quality of the gene prediction and an insight into the relationships among one class of cell wall related genes that control fruit softening in both European pear and apple.
Journal ArticleDOI
A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
Sarah M. Pilkington,Ross N. Crowhurst,Elena Hilario,Simona Nardozza,Lena G. Fraser,Yongyan Peng,Yongyan Peng,Kularajathevan Gunaseelan,Robert M. Simpson,Jibran Tahir,Simon C. Deroles,Kerry Robert Templeton,Zhiwei Luo,Marcus Davy,Canhong Cheng,Mark A McNeilage,Davide Scaglione,Yifei Liu,Qiong Zhang,P. M. Datson,Nihal De Silva,Susan E. Gardiner,H. Bassett,David Chagné,John McCallum,Helge Dzierzon,Cecilia H. Deng,Yen-Yi Wang,Lorna Barron,Kelvina I. Manako,Judith H. Bowen,Toshi Foster,Zoe A. Erridge,Heather R. Tiffin,Chethi N. Waite,Kevin M. Davies,Ella R. P. Grierson,William A. Laing,Rebecca Kirk,Xiuyin Chen,Marion Wood,Mirco Montefiori,David A. Brummell,Kathy E. Schwinn,Andrew Catanach,Christina G. Fullerton,Dawei Li,Sathiyamoorthy Meiyalaghan,Niels J. Nieuwenhuizen,Nicola C. Read,Roneel Prakash,Donald A. Hunter,Huaibi Zhang,Marian J. McKenzie,Mareike Knäbel,Alastair Harris,Andrew C. Allan,Andrew C. Allan,Andrew P. Gleave,Angela Chen,Bart J. Janssen,Blue Plunkett,Charles Ampomah-Dwamena,Charlotte Voogd,Davin Leif,Davin Leif,Declan J. Lafferty,Edwige J. F. Souleyre,Erika Varkonyi-Gasic,Francesco Gambi,Jenny Hanley,Jia-Long Yao,Joey Cheung,Karine M. David,Ben Warren,K.B. Marsh,Kimberley C. Snowden,Kui Lin-Wang,Lara Brian,Marcela Martínez-Sánchez,Mindy Y. Wang,Nadeesha R. Ileperuma,Nikolai Macnee,Robert Campin,Peter A. McAtee,Revel S.M. Drummond,Richard V. Espley,Hilary S. Ireland,Rongmei Wu,Ross G. Atkinson,Sakuntala Karunairetnam,Sean Bulley,Shayhan Chunkath,Zac Hanley,Roy Storey,Amali H. Thrimawithana,Susan Thomson,Charles David,Raffaele Testolin,Hongwen Huang,Roger P. Hellens,Robert J. Schaffer,Robert J. Schaffer +102 more
TL;DR: The use of the manual annotation tool WebApollo facilitated manual checking and correction of gene models enabling improvement of computational prediction, especially relevant for certain types of gene families such as the EXPANSIN like genes.
Journal ArticleDOI
Identification of Pyrus single nucleotide polymorphisms (SNPs) and evaluation for genetic mapping in European pear and interspecific Pyrus hybrids
Sara Montanari,Munazza Saeed,Munazza Saeed,Mareike Knäbel,Mareike Knäbel,Yoon-Kyeong Kim,Michela Troggio,Mickael Malnoy,Riccardo Velasco,Paolo Fontana,Kyungho Won,Charles-Eric Durel,Charles-Eric Durel,Charles-Eric Durel,Laure Perchepied,Laure Perchepied,Laure Perchepied,Robert J. Schaffer,Robert J. Schaffer,Claudia Wiedow,Vincent G. M. Bus,Lester Brewer,Susan E. Gardiner,Ross N. Crowhurst,David Chagné +24 more
TL;DR: This article used new generation sequencing (NGS) technologies to identify single nucleotide polymorphism (SNP) markers from three European pear (Pyrus communis L.) cultivars and subsequently developed a subset of 1096 pear SNPs into high throughput markers by combining them with the set of 7692 apple SNPs on the IRSC apple Infinium® II 8K array.
Journal ArticleDOI
Development of a highly efficient Axiom™ 70 K SNP array for Pyrus and evaluation for high-density mapping and germplasm characterization
Sara Montanari,Luca Bianco,Brian J. Allen,Pedro J. Martínez-García,Nahla V. Bassil,Joseph Postman,Mareike Knäbel,Biff Kitson,Cecilia H. Deng,David Chagné,Marc W. Crepeau,Charles H. Langley,Kate Evans,Amit Dhingra,Michela Troggio,David B. Neale +15 more
TL;DR: The Axiom Pear 70 K Genotyping Array, with its high efficiency in a widely diverse panel of Pyrus species and cultivars, represents a valuable resource for a multitude of molecular studies in pear.
Journal ArticleDOI
Integrated high-density consensus genetic map of Pyrus and anchoring of the 'Bartlett' v1.0 (Pyrus communis) genome.
Leiting Li,Cecilia H. Deng,Mareike Knäbel,David Chagné,Satish Kumar,Jiangmei Sun,Shaoling Zhang,Jun Wu +7 more
TL;DR: The integrated high-density SSR and SNP-based consensus genetic map provided new insights into the genetic structure patterns of pear and assisted in the genome assembly of ‘Bartlett’ through further exploration of different pear genetic maps.