J
Jaideep P. Sundaram
Researcher at J. Craig Venter Institute
Publications - 13
Citations - 4365
Jaideep P. Sundaram is an academic researcher from J. Craig Venter Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 12, co-authored 13 publications receiving 3936 citations. Previous affiliations of Jaideep P. Sundaram include University of Washington & University of Maryland, Baltimore.
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Journal ArticleDOI
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial “pan-genome”
Hervé Tettelin,Vega Masignani,Michael J. Cieslewicz,Claudio Donati,Duccio Medini,Naomi L. Ward,Samuel V. Angiuoli,Jonathan Crabtree,Amanda L. Jones,A. Scott Durkin,Robert T. DeBoy,Tanja M. Davidsen,Marirosa Mora,Maria Scarselli,Immaculada Margarit Y Ros,Jeremy Peterson,Christopher R. Hauser,Jaideep P. Sundaram,William C. Nelson,Ramana Madupu,Lauren M. Brinkac,Robert J. Dodson,M. J. Rosovitz,Steven A. Sullivan,Sean C. Daugherty,Daniel H. Haft,Jeremy D. Selengut,Michelle L. Gwinn,Liwei Zhou,Nikhat Zafar,Hoda Khouri,Diana Radune,George Dimitrov,Kisha Watkins,Kevin J. B. O'Connor,Shannon Smith,Teresa Utterback,Owen White,Craig E. Rubens,Guido Grandi,Lawrence C. Madoff,Dennis L. Kasper,John L. Telford,Michael R. Wessels,Rino Rappuoli,Claire M. Fraser +45 more
TL;DR: The genomic sequence of six strains representing the five major disease-causing serotypes of Streptococcus agalactiae, the main cause of neonatal infection in humans, was generated and Mathematical extrapolation of the data suggests that the gene reservoir available for inclusion in the S. agalactic pan-genome is vast and that unique genes will continue to be identified even after sequencing hundreds of genomes.
Journal ArticleDOI
Comparative genomics of trypanosomatid parasitic protozoa.
Najib M. El-Sayed,Peter J. Myler,Peter J. Myler,Gaëlle Blandin,Matthew Berriman,Jonathan Crabtree,Gautam Aggarwal,Elisabet Caler,Hubert Renauld,Elizabeth A. Worthey,Christiane Hertz-Fowler,Elodie Ghedin,Christopher S. Peacock,Daniella Castanheira Bartholomeu,Brian J. Haas,Anh Nhi Tran,Jennifer R. Wortman,U. Cecilia M. Alsmark,Samuel V. Angiuoli,Atashi Anupama,Jonathan H. Badger,Frédéric Bringaud,Eithon Cadag,Jane M. Carlton,Gustavo C. Cerqueira,Todd Creasy,Arthur L. Delcher,Appolinaire Djikeng,T. Martin Embley,Christopher R. Hauser,Alasdair Ivens,Sarah K. Kummerfeld,José B. Pereira-Leal,Daniel Nilsson,Jeremy Peterson,Steven L. Salzberg,Joshua Shallom,Joana C. Silva,Jaideep P. Sundaram,Scott J. Westenberger,Owen White,Sara E. Melville,John E. Donelson,Björn Andersson,Kenneth Stuart,Kenneth Stuart,Neil Hall +46 more
TL;DR: No evidence that these species are descended from an ancestor that contained a photosynthetic endosymbiont is revealed, and a conserved core proteome of about 6200 genes in large syntenic polycistronic gene clusters is revealed.
Journal ArticleDOI
Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus
Natalie D. Fedorova,Nora Khaldi,Vinita Joardar,Rama Maiti,Paolo Amedeo,Michael J. Anderson,Jonathan Crabtree,Joana C. Silva,Jonathan H. Badger,Ahmed A. Albarraq,Samuel V. Angiuoli,Howard Bussey,Paul Bowyer,Peter J. Cotty,Paul S. Dyer,Amy Egan,Kevin Galens,Claire M. Fraser-Liggett,Brian J. Haas,Jason M. Inman,Richard Kent,Sébastien Lemieux,Iran Malavazi,Joshua Orvis,Terry Roemer,Catherine M. Ronning,Jaideep P. Sundaram,Granger G. Sutton,G Turner,J. Craig Venter,Owen White,Brett R Whitty,Phil Youngman,Kenneth H. Wolfe,Gustavo H. Goldman,Jennifer R. Wortman,Bo Jiang,David W. Denning,William C. Nierman,William C. Nierman +39 more
TL;DR: The genome sequences of a new clinical isolate of the important human pathogen, Aspergillus fumigatus, A1163, and two closely related but rarely pathogenic species, Neosartorya fischeri NRRL181 and As pergillus clavatus NRRL1 are presented.
Journal ArticleDOI
Comparative Genomics of Emerging Human Ehrlichiosis Agents
Julie C. Dunning Hotopp,Mingqun Lin,Ramana Madupu,Jonathan Crabtree,Samuel V. Angiuoli,Jonathan A. Eisen,Rekha Seshadri,Qinghu Ren,Martin Wu,Teresa Utterback,Shannon Smith,Matthew R. Lewis,Hoda Khouri,Chunbin Zhang,Hua Niu,Quan Lin,Norio Ohashi,Ning Zhi,William C. Nelson,Lauren M. Brinkac,Robert J. Dodson,M. J. Rosovitz,Jaideep P. Sundaram,Sean C. Daugherty,Tanja M. Davidsen,Anthony S. Durkin,Michelle L. Gwinn,Daniel H. Haft,Jeremy D. Selengut,Steven A. Sullivan,Nikhat Zafar,Liwei Zhou,Faiza H. Benahmed,Heather C. Forberger,Rebecca A. Halpin,Stephanie Mulligan,Jeffrey M. Robinson,Owen White,Yasuko Rikihisa,Hervé Tettelin +39 more
TL;DR: Analysis identified proteins potentially involved in vacuole confinement of the Anaplasmataceae, a life cycle involving a hematophagous vector, vertebrate pathogenesis, human pathogenesis and lack of transovarial transmission, which provide significant insights into the biology of these obligate intracellular pathogens.
Journal ArticleDOI
Hymenoptera Genome Database: integrated community resources for insect species of the order Hymenoptera
Monica Munoz-Torres,Justin T. Reese,Christopher P. Childers,Anna K. Bennett,Jaideep P. Sundaram,Kevin L. Childs,Juan Manuel Anzola,Natalia V. Milshina,Christine G. Elsik +8 more
TL;DR: The HGD contains data from 9 different species across ∼200 million years in the phylogeny of Hymenoptera, allowing researchers to leverage genetic, genome sequence and gene expression data, as well as the biological knowledge of related model organisms.