L
Lee Murphy
Researcher at University of Edinburgh
Publications - 91
Citations - 33879
Lee Murphy is an academic researcher from University of Edinburgh. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 40, co-authored 72 publications receiving 30828 citations. Previous affiliations of Lee Murphy include Wellcome Trust & Western General Hospital.
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Journal ArticleDOI
Integrative epigenome-wide analysis demonstrates that DNA methylation may mediate genetic risk in inflammatory bowel disease
Nicholas T. Ventham,Nicholas A. Kennedy,Alex Adams,Rahul Kalla,Simon Heath,KR O’Leary,Hazel E. Drummond,Gordan Lauc,Harry Campbell,Dermot P.B. McGovern,Vito Annese,Vlatka Zoldoš,Iain K. Permberton,Manfred Wuhrer,Manfred Wuhrer,Daniel Kolarich,Daryl L. Fernandes,Evropi Theorodorou,Victoria Merrick,Daniel I. R. Spencer,Richard A. Gardner,Ray Doran,Archana Shubhakar,Ray Boyapati,Igor Rudan,Paolo Lionetti,Irena Trbojević Akmačić,Jasminka Krištić,Frano Vučković,Jerko Štambuk,Mislav Novokmet,Maja Pučić-Baković,Olga Gornik,Angelo Andriulli,Laura Cantoro,G.C. Sturniolo,Gionata Fiorino,Natalia Manetti,Anna Latiano,Anna Kohn,Renata D'Incà,Silvio Danese,Ian D. Arnott,Colin L. Noble,Charlie W. Lees,Alan G. Shand,Gwo-Tzer Ho,Malcolm G. Dunlop,Lee Murphy,Jude Gibson,Louise Evenden,Nicola Wrobel,Tamara Gilchrist,Angie Fawkes,Guinevere S. M. Kammeijer,Florent Clerc,Noortje de Haan,Aleksandar Vojta,Ivana Samaržija,Dora Markulin,Marija Klasić,Paula Dobrinić,Yurii S. Aulchenko,Tim van den Heuve,Daisy Jonkers,Marieke Pierik,Simen Vatn,Petr Ricanek,Jørgen Jahnsen,Panpan You,Janne Sølvernes,Anna B. Frengen,Tone Møller Tannæs,Aina Elisabeth Fossum Moen,Fredrik A. Dahl,Jonas Christoffer Lindstrøm,Gunn S. Ekeland,Trond Espen Detlie,Åsa V. Keita,Johan D. Söderholm,Henrik Hjortswang,Jonas Halfvarson,Daniel Bergemalm,Fernando Gomollón,Mauro D'Amato,Leif Törkvist,Fredrik Hjelm,Mats Gullberg,Niklas Nordberg,Anette Ocklind,Erik Pettersson,Daniel Ekman,Mikael Sundell,Eddie Modig,Anne Clémence Veillard,Renaud Schoemans,Dominique Poncelet,Céline Sabatel,Marta Gut,Monica Bayes,C. Casén,Torbjørn Lindahl,Ewa Ciemniejewska,Morten H. Vatn,David C. Wilson,Ivo Gut,Elaine R. Nimmo,Jack Satsangi +107 more
TL;DR: Site-specific DNA methylation changes in IBD relate to underlying genotype and associate with cell-specific alteration in gene expression, andSeparated cell data shows that IBD-associated hypermethylation within the TXK promoter region negatively correlates with gene expression in whole-blood and CD8+ T cells, but not other cell types.
Journal ArticleDOI
Genetic and environmental exposures constrain epigenetic drift over the human life course
Sonia Shah,Allan F. McRae,Riccardo E. Marioni,Riccardo E. Marioni,Sarah E. Harris,Jude Gibson,Anjali K. Henders,Paul Redmond,Simon R. Cox,Alison Pattie,Janie Corley,Lee Murphy,Nicholas G. Martin,Grant W. Montgomery,John M. Starr,Naomi R. Wray,Ian J. Deary,Peter M. Visscher,Peter M. Visscher +18 more
TL;DR: It is shown that a large number of CpGs across the genome, as a result of environmental and/or genetic constraints, have stable DNAm variation over the human lifetime, despite some sites being highly modifiable by the environment.
Journal ArticleDOI
Whole-genome sequencing reveals host factors underlying critical COVID-19
Athanasios Kousathanas,Erola Pairo-Castineira,Konrad Rawlik,Alexander Stuckey,Christopher A. Odhams,S. Walker,Clark D Russell,Tomas Malinauskas,Yang Wu,Jonathan E Millar,Xia Shen,Katherine S. Elliott,Fiona Griffiths,Wilna Oosthuyzen,K.W. Morrice,Seán Keating,Bo Wang,Daniel R. Rhodes,Lucija Klaric,Marie Zechner,Nicholas J. Parkinson,Afshan Siddiq,Peter GoddardP. Goddard,Sally Donovan,David M. Maslove,Alistair Nichol,Malcolm G Semple,Tala Zainy,Fiona Maleady-Crowe,L. Todd,Shahla Karbalaei Salehi,Julian C. Knight,Greg Elgar,G. Chan,Prabhu Arumugam,Christine Patch,Augusto Rendon,David Bentley,Clarence D. Kingsley,Jack A. Kosmicki,Julie Horowitz,Aris Baras,Gonçalo R. Abecasis,Manuel A. R. Ferreira,Anne E. Justice,Tooraj Mirshahi,Matthew T. Oetjens,Daniel J. Rader,Marylyn D. Ritchie,Anurag Verma,Tom Fowler,Manu Shankar-Hari,Charlotte Summers,Charles J. Hinds,Peter Horby,Lowell Ling,D. McAuley,Hugh Montgomery,Peter J. M. Openshaw,Paul Elliott,Timothy S. Walsh,Albert Tenesa,Angie Fawkes,Lee Murphy,Kathryn M Rowan,Chris P. Ponting,Veronique Vitart,James F. Wilson,Andrew D. Bretherick,Richard T. Scott,Sara Clohisey Hendry,Loukas Moutsianas,Andy Law,Mark J. Caulfield,J Kenneth Baillie +74 more
TL;DR: The GenOMICC (Genetics of Mortality in Critical Care) study enables the comparison of genomes from individuals who are critically ill with those of population controls to find underlying disease mechanisms as mentioned in this paper .
Journal ArticleDOI
Prevalence of small inversions in yeast gene order evolution
Cathal Seoighe,Nancy A. Federspiel,Ted Jones,Nancy F. Hansen,Vesna Bivolarovic,Ray Surzycki,Raquel Tamse,Caridad Komp,Lucas Huizar,Ronald W. Davis,Stewart Scherer,Evelyn Tait,Duncan J. Shaw,David A. Harris,Lee Murphy,Karen Oliver,Kate Taylor,Marie-Adèle Rajandream,Bart Barrell,Kenneth H. Wolfe +19 more
TL;DR: Gene order evolution in two eukaryotes was studied by comparing the Saccharomyces cerevisiae genome sequence to extensive new data from whole-genome shotgun and cosmid sequencing of Candida albicans to estimate that about 1,100 single-gene inversions have occurred since the divergence between these species.
Journal ArticleDOI
Identification of 55,000 Replicated DNA Methylation QTL.
Allan F. McRae,Riccardo E. Marioni,Sonia Shah,Jian Yang,Joseph E. Powell,Sarah E. Harris,Jude Gibson,Anjali K. Henders,Lisa Bowdler,Jodie N. Painter,Lee Murphy,Nicholas G. Martin,John M. Starr,Naomi R. Wray,Ian J. Deary,Peter M. Visscher,Peter M. Visscher,Grant W. Montgomery +17 more
TL;DR: The genetic heritability of a number of complex traits and diseases was partitioned into components due to mQTL and the remainder of the genome and enrichment was observed for height and coronary artery disease.