N
Nikos C. Kyrpides
Researcher at Joint Genome Institute
Publications - 735
Citations - 73233
Nikos C. Kyrpides is an academic researcher from Joint Genome Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 96, co-authored 711 publications receiving 62360 citations. Previous affiliations of Nikos C. Kyrpides include University of Crete & Oak Ridge National Laboratory.
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Microbial Dark Matter Phase II: Stepping deeper into unknown territory
Jessica K. Jarett,Peter F. Dunfield,Sari Peura,Paul van der Wielen,Brian P. Hedlund,Mostafa S. Elshahed,Konstantinos Ar. Kormas,Stott, Andreas Teske , Matt,Nils-Kåre Birkeland,Chuanlun Zhang,Karin Rengefors,Stephen R. Lindemann,Nikolai V. Ravin,John R. Spear,Steven J. Hallam,Sean A. Crowe,Jillian Steele,Danielle Goudeau,Rex R. Malmstrom,Nikos C. Kyrpides,Ramunas Stepanauskas,Tanja Woyke +21 more
TL;DR: Phase II of the Microbial Dark Matter project will target candidate phyla with no sequenced representatives at a variety of new sites using a combination of single-cell sequencing and shotgun metagenomics approaches.
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Standardized naming of microbiome samples in Genomes OnLine Database
Supratim Mukherjee,Galina Ovchinnikova,Dimitri Stamatis,Ci Li,I-Min A. Chen,Nikos C. Kyrpides,T. B. K. Reddy +6 more
TL;DR: The Genomes OnLine Database (GOLD) as discussed by the authors is a standardized nomenclature system for naming metagenomes and metatranscriptomes, which can be easily adopted by researchers worldwide.
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Complete Genome Sequence of Serratia quinivorans Strain 124R, a Facultative Anaerobe Isolated on Organosolv Lignin as a Sole Carbon Source.
Gina Chaput,Jacob Ford,Lani DeDiego,Achala Narayanan,Wing Yin Tam,Meghan Whalen,Marcel Huntemann,Alicia Clum,Alex Spunde,Manoj Pillay,Krishnaveni Palaniappan,Neha Varghese,Natalia Mikhailova,I-Min Chen,Dimitrios Stamatis,T. B. K. Reddy,Ronan C. O'Malley,Chris Daum,Nicole Shapiro,Natalia Ivanova,Nikos C. Kyrpides,Tanja Woyke,Tijana Glavina del Rio,Kristen M. DeAngelis +23 more
TL;DR: The complete genome sequence of the gammaproteobacterial isolate Serratia quinivorans 124R consists of 5 Mb over 2 scaffolds and a G+C content of 52.85%.
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Using IMG: Comparative Analysis with the Integrated MicrobialGenomes System
Victor Markowitz,Natalia Ivanova,Iain Anderson,Athanasios Lykidis,Konstantinos Mavromatis,Ernest Szeto,Krishna Palaniappan,I-Min A. Chen,Ken Chu,Yuri Grechkin,Nikos C. Kyrpides +10 more
TL;DR: UsingIMG 2.4 Technical Report LBNL-63614 Genome Biology Program Department of Energy Joint Genome Institute Biological Data Management and Technology Center Lawrence Berkeley National Laboratory December 1, 2007.
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The santorini volcanic complex as a valuable source of enzymes for bioenergy
Paraskevi N. Polymenakou,Paraskevi Nomikou,Haris Zafeiropoulos,Manolis Mandalakis,Thekla I. Anastasiou,Stephanos P. Kilias,Nikos C. Kyrpides,Georgios Kotoulas,Antoniοs Magoulas +8 more
TL;DR: It is concluded that the Santorini–Kolumbo volcanic ecosystems constitute a significant resource of novel genes with potential applications in bioenergy that deserve further investigation.