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Nikos C. Kyrpides
Researcher at Joint Genome Institute
Publications - 735
Citations - 73233
Nikos C. Kyrpides is an academic researcher from Joint Genome Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 96, co-authored 711 publications receiving 62360 citations. Previous affiliations of Nikos C. Kyrpides include University of Crete & Oak Ridge National Laboratory.
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Complete genome sequence of Streptosporangium roseum type strain (NI 9100 T )
Matt Nolan,Johannes Sikorski,Marlen Jando,Susan Lucas,Alla Lapidus,Tijana Glavina del Rio,Feng Chen,Hope Tice,Sam Pitluck,Jan Fang Cheng,Olga Chertkov,Olga Chertkov,David Sims,David Sims,Linda Meincke,Linda Meincke,Thomas Brettin,Thomas Brettin,Cliff Han,Cliff Han,John C. Detter,John C. Detter,David Bruce,David Bruce,Lynne Goodwin,Lynne Goodwin,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Yun Juan Chang,Yun Juan Chang,Cynthia D. Jeffries,Cynthia D. Jeffries,Natalia Ivanova,Konstantinos Mavromatis,Natalia Mikhailova,Amy Chen,Krishna Palaniappan,Patrick S. G. Chain,Patrick S. G. Chain,Manfred Rohde,Markus Göker,James Bristow,Jonathan A. Eisen,Jonathan A. Eisen,Victor Markowitz,Philip Hugenholtz,Nikos C. Kyrpides,Hans-Peter Klenk +49 more
TL;DR: This is the first completed genome sequence of a member of the family Streptosporangiaceae, and the second largest microbial genome sequence ever deciphered.
Journal ArticleDOI
NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
Theodosios Theodosiou,Georgios Efstathiou,Nikolas Papanikolaou,Nikos C. Kyrpides,Pantelis G. Bagos,Ioannis Iliopoulos,Georgios A. Pavlopoulos,Georgios A. Pavlopoulos +7 more
TL;DR: NAP is a comprehensive web tool to automate network profiling and intra/inter-network topology comparison, designed to bridge the gap between network analysis, statistics, graph theory and partially visualization in a user-friendly way.
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Complete genome sequence of the rapeseed plant-growth promoting Serratia plymuthica strain AS9
Saraswoti Neupane,Nils Högberg,Sadhna Alström,Susan Lucas,James Han,Alla Lapidus,Jan Fang Cheng,David Bruce,David Bruce,Lynne Goodwin,Lynne Goodwin,Sam Pitluck,Lin Peters,Galina Ovchinnikova,Megan Lu,Megan Lu,Cliff Han,Cliff Han,John C. Detter,John C. Detter,Roxanne Tapia,Roxanne Tapia,Anne Fiebig,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Nikos C. Kyrpides,Natalia Ivanova,Ioanna Pagani,Hans-Peter Klenk,Tanja Woyke,Roger D. Finlay +32 more
TL;DR: The genome of S. plymuthica AS9 is of special interest for its ability to inhibit fungal pathogens of rapeseed and to promote plant growth.
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Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4
Ameesha R. Shetty,Vidya de Gannes,Chioma C. Obi,Susan Lucas,Alla Lapidus,Jan Fang Cheng,Lynne Goodwin,Samuel Pitluck,Linda Peters,Natalia Mikhailova,Hazuki Teshima,Cliff Han,Roxanne Tapia,Miriam Land,Loren Hauser,Nikos C. Kyrpides,Natalia Ivanova,Ioanna Pagani,Patrick S. G. Chain,Vincent J. Denef,T. Woyke,William J. Hickey +21 more
TL;DR: Determination of the complete genome sequence of D. acidovorans Cs1-4 has provided new insights the microbial mechanisms of PAH biodegradation that may shape the process in the environment.
Journal ArticleDOI
Genomic composition and dynamics among Methanomicrobiales predict adaptation to contrasting environments.
Patrick Denis Browne,Hideyuki Tamaki,Nikos C. Kyrpides,Tanja Woyke,Lynne Goodwin,Hiroyuki Imachi,Suzanna L. Bräuer,Joseph B. Yavitt,Wen Tso Liu,Stephen H. Zinder,Hinsby Cadillo-Quiroz +10 more
TL;DR: Comparing the genomes of nine diverse Methanomicrobiales strains, examining their pangenomes, reconstructed gene flow and identified genes putatively mediating their success across different habitats suggest profound differences in electron trafficking in the MethanOMicrobiales compared with other hydrogenotrophs.