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Nikos C. Kyrpides
Researcher at Joint Genome Institute
Publications - 735
Citations - 73233
Nikos C. Kyrpides is an academic researcher from Joint Genome Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 96, co-authored 711 publications receiving 62360 citations. Previous affiliations of Nikos C. Kyrpides include University of Crete & Oak Ridge National Laboratory.
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Journal ArticleDOI
Complete genome sequence of the moderate thermophile Anaerobaculum mobile type strain (NGA T )
Konstantinos Mavromatis,Erko Stackebrandt,Brittany Held,Brittany Held,Alla Lapidus,Matt Nolan,Susan Lucas,Nancy Hammon,Nancy Hammon,Shweta Deshpande,Shweta Deshpande,Jan Fang Cheng,Roxanne Tapia,Roxanne Tapia,Lynne Goodwin,Lynne Goodwin,Sam Pitluck,Konstantinos Liolios,Ioanna Pagani,Natalia Ivanova,Natalia Mikhailova,Marcel Huntemann,Amrita Pati,Amy Chen,Krishna Palaniappan,Miriam Land,Miriam Land,Manfred Rohde,Stefan Spring,Markus Göker,Tanja Woyke,John C. Detter,James Bristow,Jonathan A. Eisen,Jonathan A. Eisen,Victor Markowitz,Philip Hugenholtz,Philip Hugenholtz,Hans-Peter Klenk,Nikos C. Kyrpides +39 more
TL;DR: The features of this anaerobic and motile bacterium are described, together with the complete genome sequence, and annotation.
Posted ContentDOI
The DOE JGI Metagenome Workflow
Alicia Clum,Marcel Huntemann,Brian Bushnell,Brian Foster,Bryce Foster,Simon Roux,Patrick Hajek,Neha Varghese,Supratim Mukherjee,T. B. K. Reddy,Chris Daum,Yuko Yoshinaga,Rekha Seshadri,Nikos C. Kyrpides,Emiley A. Eloe-Fadrosh,I-Min Chen,Alex Copeland,Natalia Ivanova +17 more
TL;DR: The different tools, databases, and parameters used at different steps of the JGI Metagenome Workflow are described to help with interpretation of metagenome data available in IMG and to enable researchers to apply this workflow to their own data.
Journal ArticleDOI
Genome sequence of the soil bacterium Saccharomonospora azurea type strain (NA-128T)
Hans-Peter Klenk,Brittany Held,Susan Lucas,Alla Lapidus,Alex Copeland,Nancy Hammon,Sam Pitluck,Lynne Goodwin,Lynne Goodwin,Cliff Han,Cliff Han,Roxanne Tapia,Roxanne Tapia,Evelyne-Marie Brambilla,Gabriele Pötter,Miriam Land,Miriam Land,Natalia Ivanova,Manfred Rohde,Markus Göker,John C. Detter,John C. Detter,Nikos C. Kyrpides,Tanja Woyke +23 more
TL;DR: The features of this organism are described, together with the complete genome sequence with project status ‘Improved high quality draft’, and the annotation.
Journal Article
Metagenomic analysis of phosphorus removing sludge communities
Hector Garcia Martin,Natalia Ivanova,Victor Kunin,Falk Warnecke,Kerrie Barry,Alice C. McHardy,Christine Yeates,Shaomei He,Asaf Salamov,Ernest Szeto,Eileen Dalin,Nik Putnam,Harris Shapiro,Jasmyn Pangilinan,Isidore Rigoutsos,Nikos C. Kyrpides,Linda L. Blackall,Katherine D. McMahon,Philip Hugenholtz +18 more
TL;DR: A metagenomic analysis of two lab-scale EBPR sludges dominated by the uncultured bacterium, Candidatus Accumulibacter phosphatis, resolves several controversies in EBPR metabolic models and provides hypotheses explaining the dominance of A. phosphatis.
Journal ArticleDOI
Genome sequence of the phage-gene rich marine Phaeobacter arcticus type strain DSM 23566T
Heike M. Freese,Hajnalka Dalingault,Jörn Petersen,Silke Pradella,Karen W. Davenport,Hazuki Teshima,Amy Chen,Amrita Pati,Natalia Ivanova,Lynne Goodwin,Lynne Goodwin,Patrick S. G. Chain,John C. Detter,John C. Detter,Manfred Rohde,Sabine Gronow,Nikos C. Kyrpides,Tanja Woyke,Thorsten Brinkhoff,Markus Göker,Jörg Overmann,Hans-Peter Klenk +21 more
TL;DR: The features of this organism including the annotated high-quality draft genome sequence are described including a potential Mu-like phage as well as a gene-transfer agent (GTA) and some particular traits are highlighted.