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Nikos C. Kyrpides
Researcher at Joint Genome Institute
Publications - 735
Citations - 73233
Nikos C. Kyrpides is an academic researcher from Joint Genome Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 96, co-authored 711 publications receiving 62360 citations. Previous affiliations of Nikos C. Kyrpides include University of Crete & Oak Ridge National Laboratory.
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Twenty-five years of Genomes OnLine Database (GOLD): data updates and new features in v.9.
Supratim Mukherjee,Dimitri Stamatis,Ci Li,Galina Ovchinnikova,Jon Bertsch,Jagadish Chandrabose Sundaramurthi,Mahathi Kandimalla,Paul A Nicolopoulos,Alessandro Favognano,I-Min A. Chen,Nikos C. Kyrpides,T. B. K. Reddy +11 more
TL;DR: The Genomes OnLine Database (GOLD) as mentioned in this paper (https://gold.jgi.doe.gov/) at the Department of Energy Joint Genome Institute (DOE-JGI) continues to maintain its role as one of the flagship genomic metadata repositories of the world.
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Erratum to: Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia.
Rich Boden,Lee P. Hutt,Marcel Huntemann,Alicia Clum,Manoj Pillay,Krishnaveni Palaniappan,Neha Varghese,Natalia Mikhailova,Dimitrios Stamatis,T. B. K. Reddy,Chew Yee Ngan,Chris Daum,Nicole Shapiro,Victor Markowitz,Natalia Ivanova,Tanja Woyke,Nikos C. Kyrpides +16 more
TL;DR: Thermithiobacillus tepidarius DSM 3134T was originally isolated from the waters of a sulfidic spring entering the Roman Baths (Temple of Sulis-Minerva) at Bath, United Kingdom and is an obligate chemolithoautotroph growing at the expense of reduced sulfur species as discussed by the authors.
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Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122T)
Miriam Land,Miriam Land,Rüdiger Pukall,Birte Abt,Markus Göker,Manfred Rohde,Tijana Glavina del Rio,Hope Tice,Alex Copeland,Jan Fang Cheng,Susan Lucas,Feng Chen,Matt Nolan,David Bruce,David Bruce,Lynne Goodwin,Lynne Goodwin,Sam Pitluck,Natalia Ivanova,Konstantinos Mavromatis,Galina Ovchinnikova,Amrita Pati,Amy Chen,Krishna Palaniappan,Loren Hauser,Loren Hauser,Yun Juan Chang,Yun Juan Chang,Cynthia C. Jefferies,Cynthia C. Jefferies,Elizabeth Saunders,Thomas Brettin,Thomas Brettin,John C. Detter,John C. Detter,Cliff Han,Cliff Han,Patrick S. G. Chain,Patrick S. G. Chain,James Bristow,Jonathan A. Eisen,Jonathan A. Eisen,Victor Markowitz,Philip Hugenholtz,Nikos C. Kyrpides,Hans-Peter Klenk,Alla Lapidus +46 more
TL;DR: This is the first completed genome sequence from the poorly populated micrococcineal family Beutenbergiaceae, and this 4,669,183 bp long single replicon genome with its 4225 protein-coding and 53 RNA genes is part of the GenomicEncyclopedia of bacteria andArchaea project.
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Genome Sequence of Porticoccus hydrocarbonoclasticus Strain MCTG13d, an Obligate Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Associated with Marine Eukaryotic Phytoplankton.
Tony Gutierrez,William B. Whitman,Marcel Huntemann,Alex Copeland,Amy Chen,Nikos C. Kyrpides,Victor Markowitz,Manoj Pillay,Natalia Ivanova,Natalia Mikhailova,Galina Ovchinnikova,Evan Andersen,Amrita Pati,Dimitrios Stamatis,T. B. K. Reddy,Chew Yee Ngan,Mansi Chovatia,Chris Daum,Nicole Shapiro,Michael N. Cantor,Tanja Woyke +20 more
TL;DR: Porticoccus hydrocarbonoclasticus strain MCTG13d is a recently discovered bacterium that is associated with marine eukaryotic phytoplankton and that almost exclusively utilizes polycyclic aromatic hydrocarbons as the sole source of carbon and energy.
Journal ArticleDOI
Description of Alicyclobacillus montanus sp. nov., a mixotrophic bacterium isolated from acidic hot springs.
Gina López,Carolina Díaz-Cárdenas,J. David Alzate,Laura N. González,Nicole Shapiro,T. Woyke,Nikos C. Kyrpides,Silvia Restrepo,Sandra Baena +8 more
TL;DR: Based on phenotypic and chemotaxonomic characteristics, phylogenetic analysis and DNA-DNA relatedness values, it can be concluded that strain USBA-GBX-503T represents a novel species of the genus Alicyclobacillus, for which the name Alicy CLB montanus sp.