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Nikos C. Kyrpides
Researcher at Joint Genome Institute
Publications - 735
Citations - 73233
Nikos C. Kyrpides is an academic researcher from Joint Genome Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 96, co-authored 711 publications receiving 62360 citations. Previous affiliations of Nikos C. Kyrpides include University of Crete & Oak Ridge National Laboratory.
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Journal ArticleDOI
Draft genome sequence of Chryseobacterium limigenitum SUR2T (LMG 28734T) isolated from dehydrated sludge
TL;DR: The genome sequence provides important information regarding bioremediation potential and pathogenic properties of this newly identified species.
Promoting, understanding, recording, and utilizing metadata in genomic/metagenomic studies
Alex D. Thomas,T. B. K. Reddy,Michelle Isbandi,Jyothi Mallajosyula,Dimitrios Stamtis,Jonathon Bertsch,Nikos C. Kyrpides +6 more
TL;DR: Author(s): Thomas, Alexander; Reddy, Tatiparthi; Isbandi, Michelle; Mallajosyula, Jyothi; Stamtis, Dimitrios; Bertsch, Jonathon; Kyrpides, Nikos.
Journal ArticleDOI
Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
Fotis A. Baltoumas,Evangelos Karatzas,David Paez-Espino,Nefeli K. Venetsianou,Eleni Aplakidou,Anastasis Oulas,Robert D. Finn,Sergey Ovchinnikov,Evangelos Pafilis,Nikos C. Kyrpides,Georgios A. Pavlopoulos +10 more
TL;DR: In this article , the authors provide a thorough review to simplify such processes and discuss the alternative methodologies that can be followed in order to explore biodiversity at the protein family level, and report the available data repositories and recommend various approaches for protein family annotation related to phylogenetic distribution, structure prediction and metadata enrichment.
Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains
Nikos C. Kyrpides,Philip Hugenholtz,Jonathan A. Eisen,Tanja Woyke,Markus Göker,Charles Thomas Parker,Rudolf Amann,Brian Beck,Patrick S. G. Chain,Jongsik Chun,Rita R. Colwell,Antoine Danchin,Peter Dawyndt,Tom Dedeurwaerdere,Edward F. DeLong,John C. Detter,Paul De Vos,Timothy J. Donohue,Xiu-Zhu Dong,Dusko Ehrlich,Claire M. Fraser,Richard A. Gibbs,Jack A. Gilbert,Paul Gilna,Frank Oliver Glöckner,Janet K. Jansson,Jay D. Keasling,Rob Knight,David P. Labeda,Alla Lapidus,Jung-Sook Lee,Wen-Jun Li,Juncai Ma,Victor M. Markowitz,Edward R. B. Moore,Mark Morrison,Folker Meyer,Karen E. Nelson,Moriya Ohkuma,Christos A. Ouzounis,Norman R. Pace,Julian Parkhill,Nan Qin,Ramon Rosselló-Móra,Johannes Sikorski,David Smith,M L Sogin,Rick Stevens,Uli Stingl,Ken-ichiro Suzuki,Dorothea Taylor,James M. Tiedje,Brian J. Tindall,Michael Wagner,George M. Weinstock,Jean Weissenbach,Owen White,Jun Wang,Lixin Zhang,Yu Guang Zhou,Dawn Field,William B. Whitman,George M. Garrity,Hans-Peter Klenk +63 more
TL;DR: This paper proposed a systematic effort to produce a comprehensive genomic catalog of all cultured Bacteria and Archaea by sequencing, where available, the type strain of each species with a validly published name.
Comparing polysaccharide decomposition between the type strains Gramella
Irina Panschin,Sixing Huang,Jan P. Meier-Kolthoff,Brian J. Tindall,Manfred Rohde,Susanne Verbarg,Alla Lapidus,James Han,Stephan Trong,Matthew Haynes,T. B. K. Reddy,Marcel Huntemann,Amrita Pati,Natalia Ivanova,Konstantinos Mavromatis,Victor Markowitz,Tanja Woyke,Markus Göker,Hans-Peter Klenk,Nikos C. Kyrpides,Richard L. Hahnke +20 more
TL;DR: In this article, two strains of the genus Gramella (family Flavobacteriacae, phylum Bacteroidetes) were isolated from marine habitats such as tidal flat sediments, coastal surface seawater and sea urchins.