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Nikos C. Kyrpides
Researcher at Joint Genome Institute
Publications - 735
Citations - 73233
Nikos C. Kyrpides is an academic researcher from Joint Genome Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 96, co-authored 711 publications receiving 62360 citations. Previous affiliations of Nikos C. Kyrpides include University of Crete & Oak Ridge National Laboratory.
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Journal ArticleDOI
Complete Genome Sequence of Thermoanaerobacterium sp. Strain RBIITD, a Butyrate- and Butanol-Producing Thermophile
Ranjita Biswas,Marcel Huntemann,Alicia Clum,Manoj Pillay,Krishnaveni Palaniappan,Neha Varghese,Natalia Mikhailova,Dimitrios Stamatis,T. B. K. Reddy,Chris Daum,Nicole Shapiro,Natalia Ivanova,Nikos C. Kyrpides,Tanja Woyke,Adam M. Guss +14 more
TL;DR: Thermoanaerobacterium sp.
Journal ArticleDOI
Non-contiguous finished genome sequence of the opportunistic oral pathogen Prevotella multisaccharivorax type strain (PPPA20T)
Amrita Pati,Sabine Gronow,Megan Lu,Megan Lu,Alla Lapidus,Matt Nolan,Susan Lucas,Nancy Hammon,Shweta Deshpande,Jan Fang Cheng,Roxanne Tapia,Roxanne Tapia,Cliff Han,Cliff Han,Lynne Goodwin,Lynne Goodwin,Sam Pitluck,Konstantinos Liolios,Ioanna Pagani,Konstantinos Mavromatis,Natalia Mikhailova,Marcel Huntemann,Amy Chen,Krishna Palaniappan,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,John C. Detter,John C. Detter,Evelyne Brambilla,Manfred Rohde,Markus Göker,Tanja Woyke,James Bristow,Jonathan A. Eisen,Jonathan A. Eisen,Victor Markowitz,Philip Hugenholtz,Philip Hugenholtz,Nikos C. Kyrpides,Hans-Peter Klenk,Natalia Ivanova +42 more
TL;DR: The 3,388,644 bp long genome is assembled in three non-contiguous contigs, harbors 2,876 protein-coding and 75 RNA genes and is a part of the GenomicEncyclopedia of bacteria andArchaea project.
Journal ArticleDOI
A transient GCN4 mRNA destabilization follows GCN4 translational derepression.
TL;DR: This study demonstrates in vivo the existence of a mechanism of mRNA degradation that is coupled with the process of translation that readjusts the steady state levels of the GCN4 mRNA.
Journal ArticleDOI
Genome sequence of the Wenxinia marina type strain (DSM 24838 T ), a representative of the Roseobacter group isolated from oilfield sediments
Thomas Riedel,Thomas Riedel,Anne Fiebig,James Han,Marcel Huntemann,Stefan Spring,Jörn Petersen,Natalia Ivanova,Victor Markowitz,Tanja Woyke,Markus Göker,Nikos C. Kyrpides,Hans-Peter Klenk +12 more
TL;DR: The features of W. marina strain HY34T are described together with the genome sequence and annotation of strain DSM 24838T and novel aspects of its phenotype and genome sequence encodes 4,047 protein-coding genes and 59 RNA genes.
Posted ContentDOI
A vast world of viroid-like circular RNAs revealed by mining metatranscriptomes
Benjamin Lee,Uri Neri,Simon Roux,Yuri I. Wolf,Antonio P. Camargo,Mart Krupovic,Peter Simmonds,Nikos C. Kyrpides,Uri Gophna,Valerian V. Dolja,Eugene V. Koonin +10 more
TL;DR: A computational pipeline to identify viroid-like covalently closed circular (ccc) RNAs was developed and applied to 5,131 global metatranscriptomes and 1,344 plant transcriptomes and found numerous putative novel viroids, satellite RNAs, retrozymes, and ribozylike viruses.