N
Nikos C. Kyrpides
Researcher at Joint Genome Institute
Publications - 735
Citations - 73233
Nikos C. Kyrpides is an academic researcher from Joint Genome Institute. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 96, co-authored 711 publications receiving 62360 citations. Previous affiliations of Nikos C. Kyrpides include University of Crete & Oak Ridge National Laboratory.
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Journal ArticleDOI
Genome sequence of the Listia angolensis microsymbiont Microvirga lotononidis strain WSM3557 T
Wayne Reeve,Julie Ardley,Rui Tian,Sofie E. De Meyer,Jason Terpolilli,Vanessa Melino,Ravi Tiwari,Ron Yates,Graham O’Hara,John Howieson,Mohamed Ninawi,Xiaojing Zhang,David Bruce,Chris Detter,Roxanne Tapia,Cliff Han,Chia-Lin Wei,Marcel Huntemann,James Han,I-Min Chen,Konstantinos Mavromatis,Victor Markowitz,Ernest Szeto,Natalia Ivanova,Ioanna Pagani,Amrita Pati,Lynne Goodwin,Tanja Woyke,Nikos C. Kyrpides +28 more
TL;DR: This is the first report of a complete genome sequence for the genus Microvirga, and strain WSM3557T is an aerobic, motile, Gram-negative, non-spore-forming rod isolated from a L. angolensis root nodule collected in Chipata, Zambia in 1963.
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Genome sequence of Microvirga lupini strain LUT6 T , a novel Lupinus alphaproteobacterial microsymbiont from Texas
Wayne Reeve,Matthew A. Parker,Rui Tian,Lynne Goodwin,Hazuki Teshima,Roxanne Tapia,Cliff Han,James Han,Konstantinos Liolios,Marcel Huntemann,Amrita Pati,Tanja Woyke,Konstantinos Mavromatis,Victor Markowitz,Natalia Ivanova,Nikos C. Kyrpides +15 more
TL;DR: The features of M. lupini LUT6T are described, together with genome sequence information and its annotation, and it is shown that this isolate forms a highly specific nitrogen-fixing symbiosis with endemic L. texensis and no other Lupinus species can form an effective nitrogen- Fixing symbiotic with this isolate.
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Genome sequence of the Thermotoga thermarum type strain (LA3T) from an African solfataric spring
Markus Göker,Stefan Spring,Carmen Scheuner,Iain Anderson,Ahmet Zeytun,Ahmet Zeytun,Matt Nolan,Susan Lucas,Hope Tice,Tijana Glavina del Rio,Jan Fang Cheng,Cliff Han,Cliff Han,Roxanne Tapia,Roxanne Tapia,Lynne Goodwin,Lynne Goodwin,Sam Pitluck,Konstantinos Liolios,Konstantinos Mavromatis,Ioanna Pagani,Natalia Ivanova,Natalia Mikhailova,Amrita Pati,Amy Chen,Krishna Palaniappan,Miriam Land,Miriam Land,Loren Hauser,Loren Hauser,Yun Juan Chang,Yun Juan Chang,Cynthia D. Jeffries,Cynthia D. Jeffries,Manfred Rohde,John C. Detter,John C. Detter,Tanja Woyke,James Bristow,Jonathan A. Eisen,Jonathan A. Eisen,Victor Markowitz,Philip Hugenholtz,Philip Hugenholtz,Nikos C. Kyrpides,Nikos C. Kyrpides,Hans-Peter Klenk,Alla Lapidus,Alla Lapidus +48 more
TL;DR: The genome of strain LA3T is the fourth sequenced genome of a type strain from the genus Thermotoga, and the sixth in the family Thermotogaceae to be formally described in a publication, and does not reveal significant discrepancies between the current classification of the group, 16S rRNA gene data and whole-genome sequences.
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Data shopping in an open marketplace: Introducing the Ontogrator web application for marking up data using ontologies and browsing using facets.
Norman Morrison,Norman Morrison,David Hancock,David Hancock,Lynette Hirschman,Peter Dawyndt,Bert Verslyppe,Nikos C. Kyrpides,Renzo Kottmann,Pelin Yilmaz,Pelin Yilmaz,Frank Oliver Glöckner,Jeffrey S. Grethe,Timothy F. Booth,Peter Sterk,Goran Nenadic,Dawn Field +16 more
TL;DR: A pilot implementation developed in collaboration with the Genomic Standards Consortium that includes content from the StrainInfo, GOLD, CAMERA, Silva and Pubmed databases is presented, which demonstrates the power of ontogration and highlights that the usefulness of this approach is fully dependent on both the quality of data and the KOS (ontologies) used.
Journal ArticleDOI
Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI943
Wayne Reeve,Elizabeth Drew,Ross Ballard,Vanessa Melino,Rui Tian,Sofie E. De Meyer,Lambert Bräu,Mohamed Ninawi,Hajnalka E. Daligault,Hajnalka E. Daligault,Karen W. Davenport,Tracy Erkkila,Lynne Goodwin,Wei Gu,A. Christine Munk,Hazuki Teshima,Yan Xu,Patrick S. G. Chain,Nikos C. Kyrpides +18 more
TL;DR: The features of R. leguminosarum bv.