P
Philip E. Bourne
Researcher at University of Virginia
Publications - 357
Citations - 64294
Philip E. Bourne is an academic researcher from University of Virginia. The author has contributed to research in topics: Protein Data Bank & Structural genomics. The author has an hindex of 68, co-authored 331 publications receiving 54563 citations. Previous affiliations of Philip E. Bourne include University of Sheffield & University of California, Los Angeles.
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Journal ArticleDOI
The Protein Data Bank
Helen M. Berman,John D. Westbrook,Zukang Feng,Gary L. Gilliland,Talapady N. Bhat,Helge Weissig,Ilya N. Shindyalov,Philip E. Bourne +7 more
TL;DR: The goals of the PDB are described, the systems in place for data deposition and access, how to obtain further information and plans for the future development of the resource are described.
Journal ArticleDOI
The FAIR Guiding Principles for scientific data management and stewardship
Mark Wilkinson,Michel Dumontier,IJsbrand Jan Aalbersberg,Gabrielle Appleton,Myles Axton,Arie Baak,Niklas Blomberg,Jan-Willem Boiten,Luiz Olavo Bonino da Silva Santos,Philip E. Bourne,Jildau Bouwman,Anthony J. Brookes,Timothy Clark,Mercè Crosas,Ingrid Dillo,Olivier G. Dumon,Scott C. Edmunds,Chris T. Evelo,Richard Finkers,Alejandra Gonzalez-Beltran,Alasdair J. G. Gray,Paul Groth,Carole Goble,Jeffrey S. Grethe,Jaap Heringa,Peter A C 't Hoen,Rob Hooft,Tobias Kuhn,Ruben Kok,Joost N. Kok,Scott J. Lusher,Maryann E. Martone,Albert Mons,Abel L. Packer,Bengt Persson,Philippe Rocca-Serra,Marco Roos,Rene van Schaik,Susanna-Assunta Sansone,Erik Anthony Schultes,Thierry Sengstag,Ted Slater,George Strawn,Morris A. Swertz,Mark Thompson,Johan van der Lei,Erik M. van Mulligen,Jan Velterop,Andra Waagmeester,Peter Wittenburg,Katherine Wolstencroft,Jun Zhao,Barend Mons,Barend Mons +53 more
TL;DR: The FAIR Data Principles as mentioned in this paper are a set of data reuse principles that focus on enhancing the ability of machines to automatically find and use the data, in addition to supporting its reuse by individuals.
Journal ArticleDOI
Protein Structure Alignment by Incremental Combinatorial Extension (CE) of the Optimal Path
TL;DR: A new algorithm is reported which builds an alignment between two protein structures which involves a combinatorial extension of an alignment path defined by aligned fragment pairs rather than the more conventional techniques using dynamic programming and Monte Carlo optimization.
Journal ArticleDOI
The Protein Data Bank.
Helen M. Berman,Tammy Battistuz,Talapady N. Bhat,Wolfgang F. Bluhm,Philip E. Bourne,Philip E. Bourne,Kyle Burkhardt,Zukang Feng,Gary L. Gilliland,Lisa Iype,Shri Jain,Phoebe Fagan,Jessica Marvin,David Padilla,Veerasamy Ravichandran,Bohdan Schneider,Narmada Thanki,Helge Weissig,John D. Westbrook,Christine Zardecki +19 more
TL;DR: The goals of the PDB are described, the systems in place for data deposition and access, how to obtain further information, and near-term plans for the future development of the resource are described.
Journal ArticleDOI
ElliPro: a new structure-based tool for the prediction of antibody epitopes
Julia Ponomarenko,Julia Ponomarenko,Huynh-Hoa Bui,Wei Li,Nicholas Fusseder,Philip E. Bourne,Philip E. Bourne,Alessandro Sette,Björn Peters +8 more
TL;DR: ElliPro is a web-tool that implements Thornton's method for identifying continuous epitopes in the protein regions protruding from the protein's globular surface and, together with a residue clustering algorithm, the MODELLER program and the Jmol viewer, allows the prediction and visualization of antibody epitope in a given protein sequence or structure.