S
Sean Humphray
Researcher at Illumina
Publications - 86
Citations - 69908
Sean Humphray is an academic researcher from Illumina. The author has contributed to research in topics: Genome & Contig. The author has an hindex of 53, co-authored 86 publications receiving 60294 citations. Previous affiliations of Sean Humphray include Wellcome Trust Sanger Institute & Washington University in St. Louis.
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Journal ArticleDOI
Corrigendum: The zebrafish reference genome sequence and its relationship to the human genome
Kerstin Howe,Matthew D. Clark,Carlos Torroja,James Torrance,Camille Berthelot,Matthieu Muffato,John E. Collins,Sean Humphray,Karen McLaren,Lucy Matthews,Stuart McLaren,Ian M Sealy,Mario Caccamo,Carol Churcher,Carol Scott,Jeffrey C. Barrett,Romke Koch,Gerd Jörg Rauch,Simon D. M. White,William Chow,Britt Kilian,Leonor T. Quintais,José Afonso Guerra-Assunção,Yi Zhou,Yong Gu,Jennifer Yen,Jan Hinnerk Vogel,Tina Eyre,Ruby Banerjee,Jianxiang Chi,Beiyuan Fu,Elizabeth Langley,Sean Maguire,Gavin K. Laird,David Lloyd,Emma J. Kenyon,Sarah Donaldson,Harminder Sehra,Jeff Almeida-King,Jane E. Loveland,Stephen J. Trevanion,Matthew Jones,Michael A. Quail,Dave Willey,Adrienne Hunt,John Burton,Sarah Sims,Kirsten McLay,Bob Plumb,J. C. Davis,Chris Clee,Karen Oliver,Richard M. Clark,Clare Riddle,David Elliott,Glen Threadgold,Glenn Harden,Darren Ware,Sharmin Begum,Beverley J. Mortimore,Giselle Kerry,Paul Heath,Benjamin Phillimore,Alan Tracey,N Corby,Matthew Dunn,Christopher N. Johnson,Jonathan Wood,Susan J. Clark,Sarah Pelan,Guy Griffiths,Michelle Smith,Rebecca Glithero,Philip Howden,Nick Barker,Christine Lloyd,Christopher Stevens,Joanna Harley,Karen Holt,Georgios Panagiotidis,J Lovell,Helen Beasley,Carl Henderson,Daria Gordon,Katherine Auger,Debbie E. Wright,Joanna Collins,Claire Raisen,Lauren Dyer,Kenric Leung,Lauren Robertson,Kirsty Ambridge,Daniel Leongamornlert,Sarah McGuire,Ruth Gilderthorp,C Griffiths,Deepa Manthravadi,Sarah Nichol,Gary L A Barker,S. Whitehead,Michael Kay,Jacqueline Brown,Clare Murnane,Emma Gray,Matthew Humphries,N Sycamore,Darren Barker,David S. Saunders,J. M. Wallis,A K Babbage,S Hammond,M Mashreghi-Mohammadi,Lucy Barr,Sancha Martin,Paul Wray,Andrew D. Ellington,Nicholas Matthews,Matthew Ellwood,Rebecca Woodmansey,Graham Clark,James D. Cooper,A Tromans,Darren Grafham,C. D. Skuce,Richard Pandian,Robert Andrews,Elliot Harrison,A M Kimberley,J Garnett,Nigel Fosker,Rebekah Hall,P Garner,Daniel P. Kelly,Christine P. Bird,Sophie Palmer,Ines Gehring,Andrea Berger,Christopher M. Dooley,Zübeyde Ersan-Ürün,Cigdem Eser,Horst Geiger,Maria Geisler,Lena Karotki,Anette Kirn,Judith Konantz,Martina Konantz,Martina Oberländer,Silke Rudolph-Geiger,Mathias Teucke,Christa Lanz,Günter Raddatz,Kazutoyo Osoegawa,Baoli Zhu,Amanda Rapp,Sara Widaa,Cordelia Langford,Fengtang Yang,Stephan C. Schuster,Nigel P. Carter,Jennifer Harrow,Zemin Ning,Javier Herrero,Steve Searle,Anton J. Enright,Robert Geisler,Ronald H.A. Plasterk,Charles Lee,Monte Westerfield,Pieter J. de Jong,Leonard I. Zon,John H. Postlethwait,Christiane Nüsslein Volhard,Tim Hubbard,Hugues Roest Crollius,Jane Rogers,Derek L. Stemple +175 more
TL;DR: This corrects the article to show that the method used to derive the H2O2 “spatially aggregating force” is based on a two-step process, not a single step, called a “shots fired” process.
Journal ArticleDOI
Genome-wide end-sequenced BAC resources for the NOD/MrkTac() and NOD/ShiLtJ() mouse genomes.
Charles A. Steward,Sean Humphray,Bob Plumb,Matthew C. Jones,Michael A. Quail,Stephen Rice,Tony Cox,Robert L. Davies,James K. Bonfield,Thomas M. Keane,Michael Nefedov,Pieter J. de Jong,Paul A. Lyons,Linda S. Wicker,John A. Todd,Yoshihide Hayashizaki,Omid M. Gulban,Jayne S. Danska,Jen Harrow,Tim Hubbard,Jane Rogers,David J. Adams +21 more
TL;DR: These BAC libraries represent a powerful resource for functional studies, such as gene targeting in NOD embryonic stem (ES) cell lines, and for sequencing and mapping experiments.
Journal ArticleDOI
A 6.9-Mb high-resolution BAC/PAC contig of human 4p15.3-p16.1, a candidate region for bipolar affective disorder
Kathryn L. Evans,Stephanie Le Hellard,S. W. Morris,Diane Lawson,Claire Whitton,Colin A. Semple,Judith A. Fantes,Helen S. Torrance,M. Pat Malloy,John C. Maule,Sean Humphray,Mark T. Ross,David R. Bentley,Walter J. Muir,Douglas Blackwood,David J. Porteous +15 more
TL;DR: The construction of an accurate, high-resolution physical map of 6.9 Mb of human chromosome 4p15.3-p16.1, which includes an 11-cM (5.8 Mb) critical region for BPAD, is reported.
Journal ArticleDOI
Erratum: Legume genome evolution viewed through the Medicago truncatula and Lotus japonicus genomes (Proceedings of the National Academy of Sciences of the United States of America (2006) 103 (14959-14964) DOI: 10.1073/pnas.0603228103)
Steven B. Cannon,Lieven Sterck,Stephane Rombauts,Shusei Sato,Foo Cheung,Jérôme Gouzy,Xiaohong Wang,Joann Mudge,Jayprakash Vasdewani,Thomas Schiex,Manuel Spannagl,Erin L. Monaghan,Christine Nicholson,Sean Humphray,Heiko Schoof,Klaus F. X. Mayer,Jane Rogers,Francis Quetier,Giles E. D. Oldroyd,Frédéric Debellé,Douglas R. Cook,Ernest F. Retzel,Bruce A. Roe,Christopher D. Town,Satoshi Tabata,Yves Van de Peer,Nevin D. Young +26 more
Posted ContentDOI
Detection of long repeat expansions from PCR-free whole-genome sequence data
Egor Dolzhenko,Joke J.F.A. van Vugt,Richard Shaw,Mitchell A. Bekritsky,Marka van Blitterswijk,Zoya Kingsbury,Sean Humphray,Raymond D. Schellevis,William J. Brands,Matthew B. Baker,Rosa Rademakers,Maarten Kooyman,Gijs H.P. Tazelaar,Michael A. van Es,Russell L. McLaughlin,William Sproviero,Aleksey Shatunov,Ashley R. Jones,Ahmad Al Khleifat,Alan M. Pittman,Sarah Morgan,Orla Hardiman,Ammar Al-Chalabi,Leonard H. van den Berg,David R. Bentley,Michael A. Eberle,Jan H. Veldink +26 more
TL;DR: A software tool called ExpansionHunter, using PCR-free WGS short-read data, can genotype repeats at the locus of interest, even if the expanded repeat is larger than the read length, and provides researchers with a tool that can be used to identify new pathogenic repeat expansions.