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Shanlin Liu
Researcher at China Agricultural University
Publications - 43
Citations - 6198
Shanlin Liu is an academic researcher from China Agricultural University. The author has contributed to research in topics: Biology & Gene. The author has an hindex of 19, co-authored 29 publications receiving 4791 citations. Previous affiliations of Shanlin Liu include Beijing Genomics Institute.
Papers
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Journal ArticleDOI
Phylogenomics resolves the timing and pattern of insect evolution
Bernhard Misof,Shanlin Liu,Karen Meusemann,Ralph S. Peters,Alexander Donath,Christoph Mayer,Paul B. Frandsen,Jessica L. Ware,Tomas Flouri,Rolf G. Beutel,Oliver Niehuis,Malte Petersen,Fernando Izquierdo-Carrasco,Torsten Wappler,Jes Rust,Andre J. Aberer,Ulrike Aspöck,Ulrike Aspöck,Horst Aspöck,Daniela Bartel,Alexander Blanke,Simon Berger,Alexander Böhm,Thomas R. Buckley,Brett Calcott,Junqing Chen,Frank Friedrich,Makiko Fukui,Mari Fujita,Carola Greve,Peter Grobe,Shengchang Gu,Ying Huang,Lars S. Jermiin,Akito Y. Kawahara,Lars Krogmann,Martin Kubiak,Robert Lanfear,Robert Lanfear,Robert Lanfear,Harald Letsch,Yiyuan Li,Zhenyu Li,Jiguang Li,Haorong Lu,Ryuichiro Machida,Yuta Mashimo,Pashalia Kapli,Pashalia Kapli,Duane D. McKenna,Guanliang Meng,Yasutaka Nakagaki,José Luis Navarrete-Heredia,Michael Ott,Yanxiang Ou,Günther Pass,Lars Podsiadlowski,Hans Pohl,Björn M. von Reumont,Kai Schütte,Kaoru Sekiya,Shota Shimizu,Adam Slipinski,Alexandros Stamatakis,Alexandros Stamatakis,Wenhui Song,Xu Su,Nikolaus U. Szucsich,Meihua Tan,Xuemei Tan,Min Tang,Jingbo Tang,Gerald Timelthaler,Shigekazu Tomizuka,Michelle D. Trautwein,Xiaoli Tong,Toshiki Uchifune,Manfred Walzl,Brian M. Wiegmann,Jeanne Wilbrandt,Benjamin Wipfler,Thomas K. F. Wong,Qiong Wu,Gengxiong Wu,Yinlong Xie,Shenzhou Yang,Qing Yang,David K. Yeates,Kazunori Yoshizawa,Qing Zhang,Rui Zhang,Wenwei Zhang,Yunhui Zhang,Jing Zhao,Chengran Zhou,Lili Zhou,Tanja Ziesmann,Shijie Zou,Yingrui Li,Xun Xu,Yong Zhang,Huanming Yang,Jian Wang,Jun Wang,Karl M. Kjer,Xin Zhou +105 more
TL;DR: The phylogeny of all major insect lineages reveals how and when insects diversified and provides a comprehensive reliable scaffold for future comparative analyses of evolutionary innovations among insects.
Journal ArticleDOI
SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads
Yinlong Xie,Yinlong Xie,Gengxiong Wu,Jingbo Tang,Ruibang Luo,Jordan Patterson,Shanlin Liu,Weihua Huang,Guangzhu He,Shengchang Gu,Shengkang Li,Xin Zhou,Tak-Wah Lam,Yingrui Li,Xun Xu,Gane Ka-Shu Wong,Jun Wang +16 more
TL;DR: The conclusion is that SOAPdenovo-Trans provides higher contiguity, lower redundancy and faster execution, compared with two other popular transcriptome assemblers.
Posted Content
SOAPdenovo-Trans: De novo transcriptome assembly with short RNA-Seq reads
Yinlong Xie,Yinlong Xie,Gengxiong Wu,Jingbo Tang,Ruibang Luo,Jordan Patterson,Shanlin Liu,Weihua Huang,Guangzhu He,Shengchang Gu,Shengkang Li,Xin Zhou,Tak-Wah Lam,Yingrui Li,Xun Xu,Gane Ka-Shu Wong,Jun Wang +16 more
TL;DR: SOAPdenovo-Trans as mentioned in this paper is a de novo transcriptome assembler designed specifically for RNA-Seq that provides higher contiguity, lower redundancy, and faster execution.
Journal ArticleDOI
MitoZ: a toolkit for animal mitochondrial genome assembly, annotation and visualization.
TL;DR: A mitogenome toolkit MitoZ is developed, consisting of independent modules of de novo assembly, findMitoScaf (find Mitochondrial Scaffolds), annotation and visualization, that can generate mitogenomes assembly together with annotations and visualization results from HTS raw reads.
Journal ArticleDOI
Genomes of the rice pest brown planthopper and its endosymbionts reveal complex complementary contributions for host adaptation
Jian Xue,Xin Zhou,Chuan-Xi Zhang,Lili Yu,Hai-Wei Fan,Zhuo Wang,Hai-Jun Xu,Yu Xi,Zeng-Rong Zhu,Wenwu Zhou,Peng-Lu Pan,Bao-Ling Li,John K. Colbourne,Hiroaki Noda,Yoshitaka Suetsugu,Tetsuya Kobayashi,Yuan Zheng,Shanlin Liu,Rui Zhang,Yang Liu,Yadan Luo,Dongming Fang,Yan Chen,Dong-Liang Zhan,Xiao-Dan Lv,Yue Cai,Zhaobao Wang,Hai-Jian Huang,Ruo-Lin Cheng,Xue-Chao Zhang,Yi-Han Lou,Bing Yu,Ji-Chong Zhuo,Yu-Xuan Ye,Wen-Qing Zhang,Zhi-Cheng Shen,Huanming Yang,Jian Wang,Jun Wang,Yan-Yuan Bao,Jiaan Cheng +40 more
TL;DR: This study reveals a series of complex adaptations of the brown planthopper involving a variety of biological processes, that result in its highly destructive impact on the exclusive host rice.