Scottish Association for Marine Science

About: Scottish Association for Marine Science is a facility organization based out in Oban, United Kingdom. It is known for research contribution in the topics: Sea ice & Benthic zone. The organization has 524 authors who have published 1765 publications receiving 70783 citations. The organization is also known as: SAMS & Scottish Marine Station for Scientific Research.

DNA barcoding of oomycetes with cytochrome c oxidase subunit I and internal transcribed spacer.

Abstract: Oomycete species occupy many different environments and many ecological niches. The genera Phytophthora and Pythium for example, contain many plant pathogens which cause enormous damage to a wide range of plant species. Proper identification to the species level is a critical first step in any investigation of oomycetes, whether it is research driven or compelled by the need for rapid and accurate diagnostics during a pathogen outbreak. The use of DNA for oomycete species identification is well established, but DNA barcoding with cytochrome c oxidase subunit I (COI) is a relatively new approach that has yet to be assessed over a significant sample of oomycete genera. In this study we have sequenced COI, from 1205 isolates representing 23 genera. A comparison to internal transcribed spacer (ITS) sequences from the same isolates showed that COI identification is a practical option; complementary because it uses the mitochondrial genome instead of nuclear DNA. In some cases COI was more discriminative than ITS at the species level. This is in contrast to the large ribosomal subunit, which showed poor species resolution when sequenced from a subset of the isolates used in this study. The results described in this paper indicate that COI sequencing and the dataset generated are a valuable addition to the currently available oomycete taxonomy resources, and that both COI, the default DNA barcode supported by GenBank, and ITS, the de facto barcode accepted by the oomycete and mycology community, are acceptable and complementary DNA barcodes to be used for identification of oomycetes.

Climate velocity and the future global redistribution of marine biodiversity

Abstract: Ocean warming will cause widespread changes in species richness and assemblage composition over coming decades, with important implications for both conservation management and international ocean governance.

Water mass modification in an Arctic fjord through cross-shelf exchange: The seasonal hydrography of Kongsfjorden, Svalbard

Abstract: [1] Kongsfjorden and the West Spitsbergen Shelf is a region whose seasonal hydrography is dominated by the balance of Atlantic Water, Arctic waters, and glacial melt. Regional seasonality and the cross-shelf exchange processes have been investigated using conductivity-temperature-depth (CTD) observations from 2000–2003 and a 5-month mooring deployment through the spring and summer of 2002. Modeling of shelf-fjord dynamics was performed with the Bergen Ocean Model. Observations show a rapid and overwhelming intrusion of Atlantic Water across the shelf and into the fjord during midsummer giving rise to intense seasonality. Pockets of Atlantic Water, from the West Spitsbergen Current, form through barotropic instabilities at the shelf front. These leak onto the shelf and propagate as topographically steered features toward the fjord. Model results indicate that such cross-front exchange is enhanced by north winds. Normally, Atlantic Water penetration into the fjord is inhibited by a density front at the fjord mouth. This geostrophic control mechanism is found to be more important than the hydraulic control common to many fjords. Slow modification of the fjord water during spring reduces the effectiveness of geostrophic control, and by midsummer, Atlantic Water intrudes into the fjord, switching from being Arctic dominant to Atlantic dominant. Atlantic Water continues to intrude throughout the summer and by September reaches some quasi steady state condition. The fjord adopts a ‘‘cold’’ or ‘‘warm’’ mode according to the degree of Atlantic Water occupation. Horizontal exchange across the shelf may be an important process causing seasonal variability in the northward heat transport to the Arctic.

A photosynthetic alveolate closely related to apicomplexan parasites

Abstract: Many parasitic Apicomplexa, such as Plasmodium falciparum, contain an unpigmented chloroplast remnant termed the apicoplast, which is a target for malaria treatment. However, no close relative of apicomplexans with a functional photosynthetic plastid has yet been described. Here we describe a newly cultured organism that has ultrastructural features typical for alveolates, is phylogenetically related to apicomplexans, and contains a photosynthetic plastid. The plastid is surrounded by four membranes, is pigmented by chlorophyll a, and uses the codon UGA to encode tryptophan in the psbA gene. This genetic feature has been found only in coccidian apicoplasts and various mitochondria. The UGA-Trp codon and phylogenies of plastid and nuclear ribosomal RNA genes indicate that the organism is the closest known photosynthetic relative to apicomplexan parasites and that its plastid shares an origin with the apicoplasts. The discovery of this organism provides a powerful model with which to study the evolution of parasitism in Apicomplexa.