University of Illinois at Chicago

About: University of Illinois at Chicago is a education organization based out in Chicago, Illinois, United States. It is known for research contribution in the topics: Population & Poison control. The organization has 57071 authors who have published 110536 publications receiving 4264936 citations.

Genesis and Variability of [ PSI ] Prion Factors in Saccharomyces cerevisiae

Abstract: We have previously shown that multicopy plasmids containing the complete SUP35 gene are able to induce the appearance of the non-Mendelian factor [ PSI ]. This result was later interpreted by others as a crucial piece of evidence for a model postulating that [ PSI ] is a self-modified, prion-like conformational derivative of the Sup35 protein. Here we support this interpretation by proving that it is the overproduction of Sup35 protein, and not the excess of SUP35 DNA or mRNA that causes the appearance of [ PSI ]. We also show that the “prion-inducing domain” of Sup35p is in the N-terminal region, which, like the “prion-inducing domain” of another yeast prion, Ure2p, was previously shown to be distinct from the functional domain of the protein. This suggests that such a chimeric organization may be a common pattern of some prion elements. Finally, we find that [ PSI ] factors of different efficiencies and different mitotic stabilities are induced in the same yeast strain by overproduction of the identical Sup35 protein. We suggest that the different [ PSI ]-containing derivatives are analogous to the mysterious mammalian prion strains and result from different conformational variants of Sup35p.

Lacunarity analysis: A general technique for the analysis of spatial patterns

Abstract: Lacunarity analysis is a multiscaled method for describing patterns of spatial dispersion. It can be used with both binary and quantitative data in one, two, and three dimensions. Although originally developed for fractal objects, the method is more general and can be readily used to describe nonfractal and multifractal patterns. Lacunarity analysis is broadly applicable to many data sets used in the natural sciences; we illustrate its application to both geological and ecological data. {copyright} {ital 1996 The American Physical Society.}

A cis-regulatory map of the Drosophila genome

Abstract: Systematic annotation of gene regulatory elements is a major challenge in genome science. Direct mapping of chromatin modification marks and transcriptional factor binding sites genome-wide has successfully identified specific subtypes of regulatory elements. In Drosophila several pioneering studies have provided genome-wide identification of Polycomb response elements, chromatin states, transcription factor binding sites, RNA polymerase II regulation and insulator elements; however, comprehensive annotation of the regulatory genome remains a significant challenge. Here we describe results from the modENCODE cis-regulatory annotation project. We produced a map of the Drosophila melanogaster regulatory genome on the basis of more than 300 chromatin immunoprecipitation data sets for eight chromatin features, five histone deacetylases and thirty-eight site-specific transcription factors at different stages of development. Using these data we inferred more than 20,000 candidate regulatory elements and validated a subset of predictions for promoters, enhancers and insulators in vivo. We identified also nearly 2,000 genomic regions of dense transcription factor binding associated with chromatin activity and accessibility. We discovered hundreds of new transcription factor co-binding relationships and defined a transcription factor network with over 800 potential regulatory relationships.