Showing papers by "University of Rennes published in 1998"

Vector potentials in three-dimensional non-smooth domains

Abstract: On presente dans cet article un certain nombre de resultats concernant le potentiel vecteur associe a une fonction a divergence nulle dans un ouvert borne de dimension trois. En particulier, plusieurs types de conditions aux limites sont proposes, pour lesquels on discute l'existence, l'unicite et la regularite du potentiel vecteur. On analyse la convergence d'une discretisation par elements finis de ces potentiels et on indique une application concernant l'approximation de fluides visqueux incompressibles.

Mutation Spectrum and Genotype-Phenotype Analyses in Cowden Disease and Bannayan-Zonana Syndrome, Two Hamartoma Syndromes With Germline PTEN Mutation

Abstract: The tumour suppressor gene PTEN , which maps to 10q23.3 and encodes a 403 amino acid dual specificity phosphatase (protein tyrosine phosphatase; PTPase), was shown recently to play a broad role in human malignancy. Somatic PTEN deletions and mutations were observed in sporadic breast, brain, prostate and kidney cancer cell lines and in several primary tumours such as endometrial carcinomas, malignant melanoma and thyroid tumours. In addition, PTEN was identified as the susceptibility gene for two hamartoma syndromes: Cowden disease (CD; MIM 158350) and Bannayan-Zonana (BZS) or Ruvalcaba-Riley-Smith syndrome (MIM 153480). Constitutive DNA from 37 CD families and seven BZS families was screened for germline PTEN mutations. PTEN mutations were identified in 30 of 37 (81%) CD families, including missense and nonsense point mutations, deletions, insertions, a deletion/insertion and splice site mutations. These mutations were scattered over the entire length of PTEN , with the exception of the first, fourth and last exons. A 'hot spot' for PTEN mutation in CD was identified in exon 5 that contains the PTPase core motif, with 13 of 30 (43%) CD mutations identified in this exon. Seven of 30 (23%) were within the core motif, the majority (five of seven) of which were missense mutations, possibly pointing to the functional significance of this region. Germline PTEN mutations were identified in four of seven (57%) BZS families studied. Interestingly, none of these mutations was observed in the PTPase core motif. It is also worthy of note that a single nonsense point mutation, R233X, was observed in the germline DNA from two unrelated CD families and one BZS family. Genotype-phenotype studies were not performed on this small group of BZS families. However, genotype-phenotype analysis inthe group of CD families revealed two possible associations worthy of follow-up in independent analyses. The first was an association noted in the group of CD families with breast disease. A correlation was observed between the presence/absence of a PTEN mutation and the type of breast involvement (unaffected versus benign versus malignant). Specifically and more directly, an association was also observed between the presence of a PTEN mutation and malignant breast disease. Secondly, there appeared to be an interdependent association between mutations upstream and within the PTPase core motif, the core motif containing the majority of missense mutations, and the involvement of all major organ systems (central nervous system, thyroid, breast, skin and gastrointestinal tract). However, these observations would need to be confirmed by studying a larger number of CD families.

Liver cell models in in vitro toxicology.

Abstract: In vitro liver preparations are increasingly used for the study of hepatotoxicity of chemicals. In recent years their actual advantages and limitations have been better defined. The cell models, slices, and mainly primary hepatocyte cultures, appear to be the most powerful in vitro systems, as liver-specific functions and responsiveness to inducers are retained either for a few days or several weeks depending on culture conditions. Maintenance of phase I and phase II xenobiotic metabolizing enzyme activities allows various chemical investigations to be performed, including determination of kinetic parameters, metabolic profile, interspecies comparison, inhibition and induction effects, and drug-drug interactions. In vitro liver cell models also have various applications in toxicology: screening of cytotoxic and genotoxic compounds, evaluation of chemoprotective agents, and determination of characteristic liver lesions and associated biochemical mechanisms induced by toxic compounds. Extrapolation of the results to the in vivo situation remains a matter of debate. Presently, the most convincing applications of liver cell models are the studies on different aspects of metabolism and mechanisms of toxicity. For the future, there is a need for better culture conditions and differentiated hepatocyte cell lines to overcome the limited availability of human liver tissues. In addition, strategies for in vitro analysis of potentially toxic chemicals must be better defined.

Development, maintenance and role of riparian vegetation in the river landscape

Abstract: Summary 1. Riparian structure and function were considered from a longitudinal perspective in order to identify multiscale couplings with adjacent ecosystems and to identify research needs. 2. We characterized functional zones (with respect to vegetation development in association with various biogeochemical processes) within geomorphological settings using a delineation based upon erosional, transitional and depositional properties. 3. Vegetation dynamics within the riparian corridor are clearly influenced substantially by hydrological disturbance regimes. In turn, we suggest that vegetation productivity and diversity may widely influence riverine biogeochemical processes, especially as related to the consequences of changing redox conditions occurring from upstream to downstream. 4. However, surface and groundwater linkages are the predominant controls of landscape connectivity within riparian systems. 5. The importance of riparian zones as sources and sinks of matter and energy was examined in context of structural and functional attributes, such as sequestering or cycling of nutrients in sediments, retention of water in vegetation, and retention, diffusion or dispersal of biota. 6. The consequences of interactions between different communities (e.g. animals and plants, micro-organisms and plants) on biogeochemical processes are notably in need of research, especially with respect to control of landscape features. Multiscale approaches, coupling regional and local factors in all three spatial dimensions, are needed in order to understand more synthetically and to model biogeochemical and community processes within the river-riparian-upland landscape of catchments.

Comparative biodiversity along a gradient of agricultural landscapes

Abstract: The aim of this study is to compare biodivemity in contrasted landscape units within a small region. In western France agricultural intensification leads to changes in landscape structure: permanent grasslands are ploughed, fields enlarged and surrounding hedgerows removed or deteriorated, brooks are straightened and cleaned. South of Mont Saint Michel Bay, four landscape units have been identified along an intensi- fication gradient. Several taxonomic groups (small mammals, birds, insects and plants) have been used to evaluate the characteristics of biodiver- sity along this gradient. The hypothesis that intensification of agricultural practices lead to changes in biodiversity has been tested. Biodiversity is measured by the species richness, Shannon's diversity index, equitability and similarity indexes. Our results show that intensification of agriculture does not always lead to a decrease in species richness, but to several functional responses according to taxonomic groups, either no modification, or stability by replacement of species, or loss of species. For most of the studied taxo- nomic groups species richness does not vary greatly along the gradient. Depending on the landscape structure and farming systems this gradient is probably truncated and does not allow to show major changes in species richness. An alternative hypothesis is that used indexes are not sensitive enough to reveal changes in biodiversity. Nevertheless, similarity indexes reveal that sensitivity to changes varies, invertebrates being more likely to perceive the dynamics of the landscapes studied than vertebrates or plants. These points have to be taken into consideration when elaborating policies for sustainable agriculture or nature conservation. 0 Elsevier, Paris

Impaired pressor sensitivity to noradrenaline in septic shock patients with and without impaired adrenal function reserve

Abstract: Aims To investigate the relationship between adrenal gland function and pressor response to noradrenaline in septic shock.

The Xenopus protein kinase pEg2 associates with the centrosome in a cell cycle-dependent manner, binds to the spindle microtubules and is involved in bipolar mitotic spindle assembly.

Abstract: By differential screening of a Xenopus laevis egg cDNA library, we have isolated a 2,111 bp cDNA which corresponds to a maternal mRNA specifically deadenylated after fertilisation. This cDNA, called Eg2, encodes a 407 amino acid protein kinase. The pEg2 sequence shows significant identity with members of a new protein kinase sub-family which includes Aurora from Drosophila and Ipl1 (increase in ploidy-1) from budding yeast, enzymes involved in centrosome migration and chromosome segregation, respectively. A single 46 kDa polypeptide, which corresponds to the deduced molecular mass of pEg2, is immunodetected in Xenopus oocyte and egg extracts, as well as in lysates of Xenopus XL2 cultured cells. In XL2 cells, pEg2 is immunodetected only in S, G2 and M phases of the cell cycle, where it always localises to the centrosomal region of the cell. In addition, pEg2 'invades' the microtubules at the poles of the mitotic spindle in metaphase and anaphase. Immunoelectron microscopy experiments show that pEg2 is located precisely around the pericentriolar material in prophase and on the spindle microtubules in anaphase. We also demonstrate that pEg2 binds directly to taxol stabilised microtubules in vitro. In addition, we show that the presence of microtubules during mitosis is not necessary for an association between pEg2 and the centrosome. Finally we show that a catalytically inactive pEg2 kinase stops the assembly of bipolar mitotic spindles in Xenopus egg extracts.

The Microbial Loop at the Surface of a Peatland:Structure, Function, and Impact of Nutrient Input

Abstract: The aim of this study was to assess the structure and function of the microbial loop in a peatland of the French Massif central, and the impact of fertilization on the different microbial communities. In terms of biomass, testate Amoeba (48% of the total microbial biomass), heterotrophic bacteria (15%), cyanobacteria (14%) and Bacillariophyceae (13%) were the dominant groups of microorganisms. Other microalgae (7%), ciliates (2%) and heterotrophic flagellates (1%) accounted for only a low proportion of total microbial biomass. The relative importance of heterotrophic microorganisms was higher than in marine or lacustrine environments. In addition, ciliates and heterotrophic flagellates only constituted a small proportion of the total protozoan biomass, which was heavily dominated by testate amoeba. Thus, the structure of the protist community in the subaquatic peatland was completely different from that reported for lakes or marine environments. In other aspects, the supply of nutrients (PKCa and NPKCa) resulted in increases of the relative biomasses of heterotrophic bacteria, Bacillariophyceae, and ciliates and by a decrease in the relative proportion of testate amoeba and of other microalgae.

Prediction of functional residues in water channels and related proteins.

Abstract: In this paper, we present an updated classification of the ubiquitous MIP (Major Intrinsic Protein) family proteins, including 153 fully or partially sequenced members available in public databases. Presently, about 30 of these proteins have been functionally characterized, exhibiting essentially two distinct types of channel properties: (1) specific water transport by the aquaporins, and (2) small neutral solutes transport, such as glycerol by the glycerol facilitators. Sequence alignments were used to predict amino acids and motifs discriminant in channel specificity. The protein sequences were also analyzed using statistical tools (comparisons of means and correspondence analysis). Five key positions were clearly identified where the residues are specific for each functional subgroup and exhibit high dissimilar physico-chemical properties. Moreover, we have found that the putative channels for small neutral solutes clearly differ from the aquaporins by the amino acid content and the length of predicted loop regions, suggesting a substrate filter function for these loops. From these results, we propose a signature pattern for water transport.

Variation of Microcystin Content of Cyanobacterial Blooms and Isolated Strains in Lake Grand-Lieu (France)

Abstract: Cyanobacterial blooms were sampled at five locations in Lake Grand-Lieu on seven different occasions during May–October 1994. Strains of Microcystis aeruginosa and Anabaena circinalis were isolated from the samples. Microcystins were detected in freeze-dried field samples and the isolated strains by HPLC. The toxins were present in the blooms sampled between June and October. The microcystin content in the blooms varied with site and time, from undetectable concentrations to 0.23 mg g−1. The highest concentrations of microcystin were found in blooms sampled in September. Microcystin-LR and microcystins with retention times close to the retention time of [Dha7]microcystin-RR (probably varieties of microcystin-RR) were found in the field samples. Sixteen of the 98 isolated M. aeruginosa strains and 2 of the 24 A. circinalis strains produced microcystins. The total amount of microcystins varied from undetectable concentrations to 5.06 mg g−1 in the M. aeruginosa isolates, and from undetectable concentrations to 1.86 mg g−1 in the A. circinalis strains. Microcystin-LR was the main toxin found in strains of M. aeruginosa, but was not present in strains of A. circinalis. Both microcystin-producing strains and strains that did not produce microcystin coexisted in the bloom samples.

Stress‐induced changes in polyamine and tyramine levels can regulate proline accumulation in tomato leaf discs treated with sodium chloride

Abstract: The effect of salt stress on proline (Pro) accumulation and its relationship with the changes occurring at the level of polyamine (PA) metabolism and tyramine were investigated in leaf discs of tomato (Lycopersicon esculentum). The rate of accumulation of Pro, PA and tyramine was higher in the salt-sensitive than in the salt-tolerant cultivar. In the salt-sensitive cultivar, Pro started to accumulate 4 h after the onset of the NaCl treatment, its maximum level being reached 27 h later. The lag phase was associated with a rapid decrease in putrescine (Put) and spermidine (Spd) and some increase in 1,3-diaminopropane (Dap), a product of Spd and/or spermine (Spm) oxidation. This was followed by an increase in agmatine (Agm), cadaverine (Cad), Spm and tyramine. α-DL-difluoromethylarginine (DFMA), an inhibitor of arginine decarboxylase (ADC, EC 4.1.1.19), induced a decrease in the Put level in both control and stressed discs, while α-DL-difluoromethylomithine (DFMO), an inhibitor of ornithine decarboxylase (ODC, EC 4.1.1.17), caused a decrease in Spd and Spm levels only in salinized discs. These data suggest that ADC is operating under both control and stress conditions, whereas ODC activity is promoted only in response to salt stress. DFMA also depressed the salt-induced Pro accumulation while DFMO did not inhibit this response. In salt-stressed leaf discs, the decrease in Spd level in response to methylglyoxal-bis-(guanylhydrazone) (MGBG) or cyclohexylammonium (CHA) treatment suggests that salt stress did not block SAM decarboxylase or Spd synthase activities. However, the increased level of Dap reflected a salt stress-promoted oxidation of PA. CHA and MGBG had no effect on Pro accumulation. Putrescine, Dap and especially tyramine supplied at low concentrations stimulated the Pro response which was, however, suppressed by application of Spm. Treatment with aminoguanidine, an inhibitor of diamine oxidases, also strongly inhibited Pro accumulation. These data suggest that salt-induced Pro accumulation in tomato leaf discs is closely related to changes in their PA metabolism, either via substrate-product relationships or regulatory effects at target(s) which remain to be characterized.

Geochemical and Isotopic Characteristics of UHP Eclogites and Ultramafic Rocks of the Dabie Orogen: Implications for Continental Subduction and Collisional Tectonics

Abstract: Geochemical and Nd-Sr isotope tracer studies of ultrahigh-pressure (UHP) eclogites and associated ultramafic rocks from the Su—Lu and Dabie terranes of central China provide important constraints on tectonic models of continental subduction, collision, and subsequent exhumation in the Dabie orogen. UHP eclogites have three types of occurrence: I) enclaves in ortho- and paragneisses gneisses of granitic composition, II) enclaves in or interlayers with marbles or metaclastic sediments (e.g., garnet-mica schists), and III) enclaves and interlayers with ultramafic rocks. The eclogites are mainly of basaltic composition, but show a wide range of major and trace element abundances, suggesting multiple origins and heterogeneous sources, and in some cases, metamorphic segregation.

EDEN and EDEN-BP, a cis element and an associated factor that mediate sequence-specific mRNA deadenylation in Xenopus embryos

Abstract: During Xenopus early development, gene expression is regulated mainly at the translational level by the length of the poly(A) tail of mRNAs. The Eg family and c-mos maternal mRNAs are deadenylated rapidly and translationally repressed after fertilization. Here, we characterize a short sequence element (EDEN) responsible for the rapid deadenylation of Eg5 mRNA. Determining the core EDEN sequence permitted us to localize the c-mos EDEN sequence. The c-mos EDEN confered a rapid deadenylation to a reporter gene. The EDEN-specific RNA-binding protein (EDEN-BP) was purified and a cDNA obtained. EDEN-BP is highly homologous to a human protein possibly involved in myotonic dystrophy. Immunodepleting EDEN-BP from an egg extract totally abolished the EDEN-mediated deadenylation activity, but did not affect the default deadenylation activity. Therefore, EDEN-BP constitutes the first trans-acting factor for which an essential role in the specificity of mRNA deadenylation has been directly demonstrated.

Chalcogenide glasses with large non-linear refractive indices

Abstract: Non-linear refractive indices and non-linear absorptions of several chalcogenide glasses have been measured by the z-scan method at 1.06 μm, to evaluate their potential use in telecommunication as all optical ultra-fast switching devices. The index obtained for the reference glass As 2 S 3 (2.5 × 10 −18 m 2 /W) agrees with that found in the literature. Glasses in Ge–Se and Ge–Se–As systems have been measured. Non-linear refractive indices four times larger (10.2 × 10 −18 m 2 /W) than that of As 2 S 3 have been obtained for a Ge–Se–As glass.

Clonal diversity in a Rhododendron ferrugineum L. (Ericaceae) population inferred from AFLP markers

Abstract: In the European Alps, Rhonodendron ferrugineum can constitute dense populations with almost 100% of cover. The developmental pattern by layering and the resulting complexity of population structure make it difficult to identify distinct clones even by excavation. Therefore genotypic structure of a R. ferrugineum population, in the French Alps, was inferred from AFLP markers. In a first step, we analysed 400 samples using AFLP profiles generated by one selective primer pair. Seventeen bands out of 25 were polymorphic (68%). We identified a total of 32 multilocus genotypes. In a second step, the 32 genotypes were verified by applying two additional primer pairs to the two most distant samples from each genotype. The mean similarity (proportion of band sharing) between pairs of clones was 0.85 (range from 0.52 to 0.94). The spatial distribution of clones showed that vegetative spreading mainly occurred down a slope. Based on an annual shoot mean growth of 2.6 cm/year and the size of the widest clone, we estimated the age of the oldest individual to be at least 300 years. A single genotype can occupy a large surface and sometimes form a dense patch, suggesting that this species adopts a phalanx growth form with limited intermingling of some genets.

Synthesis and Magnetic Behavior of Rare-Earth Complexes with N,O-Chelating Nitronyl Nitroxide Triazole Ligands: Example of a [GdIII{Organic Radical}2] Compound with anS=9/2 Ground State

Abstract: A ferromagnetically coupled gadolinium–radical compound is described A series of three lanthanide complexes of general formula [Ln(organic radical)2(NO3)3] (Ln =Y3+, La3+, and Gd3+, shown on the right) have been synthesized With the paramagnetic GdIII a ferromagnetic interaction with the ligands was found, which gives rise to a S = 9/2 ground-state spin

Were komatiites wet

Abstract: The main arguments used to support the concept that komatiites form by melting of hydrous mantle are as follows: (1) Water reduces liquidus temperatures from extreme values to lower, more “normal” temperatures. (2) Some komatiites are pyroclastic and some contain vesicles, features that have been attributed to magmatic volatiles. (3) It is claimed from experimental studies of peridotite melting that the chemical composition of komatiite requires the presence of water, as does their characteristic spinifex textures. Counterarguments are the following: (1) Loss of volatiles as hydrous komatiite approaches the surface should produce degassing textures and structures, which, though not unknown, are rare in komatiites. Degassing should produce a highly supercooled liquid that partially crystallizes to porphyritic magma; komatiites commonly erupt as phenocryst-poor, highly magnesian lavas. (2) Chemical and isotopic compositions of most komatiites indicate that their mantle source became depleted in incompatible elements soon before magma formation. Such depletion removes water, leaving a dry source. (3) The experimental data are at best ambiguous; neither the chemical composition of komatiites, nor the crystallization of spinifex, requires the presence of water. We conclude that although some rare komatiites may be hydrous, most are dry.

Witt Rings in Real Algebraic Geometry

Abstract: In the first section we define the Witt ring W(A) of a commutative ring A and compare it with the group K 0(A). In particular, if V is an algebraic set over a real closed field R, we show that the Witt ring W(S 0(V)) coincides with K 0(S 0(V)) (≃ KO(V) if R = ℝ). The second section is devoted to the result of Mahe concerning the separation of the semi-algebraically connected components of V by the signatures of elements of W(P(V)). In the third section we prove that the morphism W(P(V))[1/2] → W(S 0(V))[1/2], induced by the inclusion P(V) → S 0(V), is surjective. This is part of the result of Brumfiel, which asserts that this morphism is actually an isomorphism.

Two mantle sources, two plumbing systems : tholeiitic and alkaline magmatism of the maymecha river basin, siberian flood volcanic province

Abstract: Rocks of two distinctly different magma series are found in a ∼4000-m-thick sequence of lavas and tuffs in the Maymecha River basin which is part of the Siberian flood-volcanic province. The tholeiites are typical low-Ti continental flood basalts with remarkably restricted, petrologically evolved compositions. They have basaltic MgO contents, moderate concentrations of incompatible trace elements, moderate fractionation of incompatible from compatible elements, distinct negative Ta(Nb) anomalies, and Nd values of 0 to +2. The primary magmas were derived from a relatively shallow mantle source, and evolved in large crustal magma chambers where they acquired their relatively uniform compositions and became contaminated with continental crust. An alkaline series, in contrast, contains a wide range of rock types, from meymechite and picrite to trachytes, with a wide range of compositions (MgO from 0.7 to 38 wt%, SiO2 from 40 to 69 wt%, Ce from 14 to 320 ppm), high concentrations of incompatible elements and extreme fractionation of incompatible from compatible elements (Al2O3/TiO2∼1; Sm/Yb up to 11). These rocks lack Ta(Nb) anomalies and have a broad range of Nd values, from −2 to +5. The parental magmas are believed to have formed by low-degree melting at extreme mantle depths (>200 km). They bypassed the large crustal magma chambers and ascended rapidly to the surface, a consequence, perhaps, of high volatile contents in the primary magmas. The tholeiitic series dominates the lower part of the sequence and the alkaline series the upper part; at the interface, the two types are interlayered. The succession thus provides evidence of a radical change in the site of mantle melting, and the simultaneous operation of two very different crustal plumbing systems, during the evolution of this flood-volcanic province.

Identifying functional groups for response to disturbance in an abandoned pasture.

Abstract: In an abandoned pasture in Brittany, we compared artificial small-scale disturbances to natural disturbances by wild boar and undisturbed vegetation. We developed a multivariate statistical approach which analyses how species biological attributes explain the response of community composition to disturbances. This technique, which reconciles the inductive and deductive approaches for functional classifications, identifies groups of species with similar responses to disturbance and characterizes their biological profiles. After 5 months of recolonization, artificial disturbances had a greater species richness than undisturbed vegetation as a result of recruitment of new species without the exclusion of pre-existing matrix species. Species morphology, described by canopy structure, canopy height and lateral spread, explained a large part (16 %) of community response to disturbance. Regeneration strategies, described by life history, seed mass, dispersal agent, dormancy and the existence of vegetative multiplication, explained a smaller part of community response to disturbance (8 %). Artificial disturbances were characterized by therophyte and compact rosettes with moderately dormant seeds, including a number of Asteraceae and other early successional species. Natural disturbances were colonized by leafy guerrilla species without seed dormancy. Few species were tightly related to undisturbed vegetation and were essentially grasses with a phalanx rosette morphology. The functional classification obtained is consistent with the classification of the community into fugitives, regenerators and persistors. These groups are structured according to Grubb's model for temperate grasslands, with regenerators and persistors in the matrix and fugitives taking advantage of gaps open by small-scale disturbances. The conjunction of functional diversity and species diversity within functional groups is the key to resilience to disturbance, an important ecosystem function.

X-ray diffraction study of the early stages of the growth of nanoscale zinc oxide crystallites obtained from thermal decomposition of four precursors. General concepts on precursor-dependent microstructural properties

Abstract: A detailed analysis of the microstructural properties of nanocrystalline zinc oxide powders produced by thermal decomposition of four different precursors (hydroxide nitrate, oxalate, hydroxide car

Spectroscopic properties of trivalent lanthanide ions in fluorophosphate glasses

Abstract: We describe the spectroscopic properties of the trivalent lanthanide ions Ce3+, Pr3+, Nd3+, Sm3+, Eu3+, Gd3+, Tb3+, Dy3+, Ho3+, Er3+, Tm3+ and Yb3+ in the fluorophosphate glasses 75NaPO3–24CaF2–1LnF3 and 75NaPO3–20CaF2–5LnF3 (where Ln=lanthanide ion) Absorption and luminescence spectra are discussed The dipole strengths of the transitions in the absorption spectrum are parametrized in terms of three Ωλ (λ=2, 4 and 6) Judd–Ofelt intensity parameters These phenomenological parameters are used to predict the luminescence properties of the lanthanide ions in the fluorophosphate glasses Attention is paid to the trend of the intensity parameters over the lanthanide series