Showing papers in "Biology Letters in 2008"

Species detection using environmental DNA from water samples.

Abstract: The assessment of species distribution is a first critical phase of biodiversity studies and is necessary to many disciplines such as biogeography, conservation biology and ecology. However, several species are difficult to detect, especially during particular time periods or developmental stages, potentially biasing study outcomes. Here we present a novel approach, based on the limited persistence of DNA in the environment, to detect the presence of a species in fresh water. We used specific primers that amplify short mitochondrial DNA sequences to track the presence of a frog (Rana catesbeiana) in controlled environments and natural wetlands. A multi-sampling approach allowed for species detection in all environments where it was present, even at low densities. The reliability of the results was demonstrated by the identification of amplified DNA fragments, using traditional sequencing and parallel pyrosequencing techniques. As the environment can retain the molecular imprint of inhabiting species, our approach allows the reliable detection of secretive organisms in wetlands without direct observation. Combined with massive sequencing and the development of DNA barcodes that enable species identification, this approach opens new perspectives for the assessment of current biodiversity from environmental samples.

Predicting extinction risks under climate change: coupling stochastic population models with dynamic bioclimatic habitat models.

Abstract: Species responses to climate change may be influenced by changes in available habitat, as well as population processes, species interactions and interactions between demographic and landscape dynamics. Current methods for assessing these responses fail to provide an integrated view of these influences because they deal with habitat change or population dynamics, but rarely both. In this study, we linked a time series of habitat suitability models with spatially explicit stochastic population models to explore factors that influence the viability of plant species populations under stable and changing climate scenarios in South African fynbos, a global biodiversity hot spot. Results indicate that complex interactions between life history, disturbance regime and distribution pattern mediate species extinction risks under climate change. Our novel mechanistic approach allows more complete and direct appraisal of future biotic responses than do static bioclimatic habitat modelling approaches, and will ultimately support development of more effective conservation strategies to mitigate biodiversity losses due to climate change.

Predicting current and future biological invasions: both native and invaded ranges matter

Abstract: The classical approach to predicting the geographical extent of species invasions consists of training models in the native range and projecting them in distinct, potentially invasible areas. However, recent studies have demonstrated that this approach could be hampered by a change of the realized climatic niche, allowing invasive species to spread into habitats in the invaded ranges that are climatically distinct from those occupied in the native range. We propose an alternative approach that involves fitting models with pooled data from all ranges. We show that this pooled approach improves prediction of the extent of invasion of spotted knapweed (Centaurea maculosa) in North America on models based solely on the European native range. Furthermore, it performs equally well on models based on the invaded range, while ensuring the inclusion of areas with similar climate to the European niche, where the species is likely to spread further. We then compare projections from these models for 2080 under a severe climate warming scenario. Projections from the pooled models show fewer areas of intermediate climatic suitability than projections from the native or invaded range models, suggesting a better consensus among modelling techniques and reduced uncertainty.

Thermal tolerance, acclimatory capacity and vulnerability to global climate change

Abstract: Despite evidence that organismal distributions are shifting in response to recent climatic warming, we have little information on direct links between species' physiology and vulnerability to climate change. We demonstrate a positive relationship between upper thermal tolerance and its acclimatory ability in a well-defined clade of closely related European diving beetles. We predict that species with the lowest tolerance to high temperatures will be most at risk from the adverse effects of future warming, since they have both low absolute thermal tolerance and poor acclimatory ability. Upper thermal tolerance is also positively related to species' geographical range size, meaning that species most at risk are already the most geographically restricted ones, being endemic to Mediterranean mountain systems. Our findings on the relationship between tolerance and acclimatory ability contrast with results from marine animals, suggesting that generalizations regarding thermal tolerance and responses to future rapid climate change may be premature.

The coincidence of climatic and species rarity: high risk to small-range species from climate change

Abstract: Why do areas with high numbers of small-range species occur where they do? We found that, for butterfly and plant species in Europe, and for bird species in the Western Hemisphere, such areas coincide with regions that have rare climates, and are higher and colder areas than surrounding regions. Species with small range sizes also tend to occur in climatically diverse regions, where species are likely to have been buffered from extinction in the past. We suggest that the centres of high small-range species richness we examined predominantly represent interglacial relict areas where cold-adapted species have been able to survive unusually warm periods in the last ca 10 000 years. We show that the rare climates that occur in current centres of species rarity will shrink disproportionately under future climate change, potentially leading to high vulnerability for many of the species they contain.

Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes.

Abstract: Advances in molecular phylogeny of eukaryotes have suggested a tree composed of a small number of supergroups. Phylogenomics recently established the relationships between some of these large assemblages, yet the deepest nodes are still unresolved. Here, we investigate early evolution among the major eukaryotic supergroups using the broadest multigene dataset to date (65 species, 135 genes). Our analyses provide strong support for the clustering of plants, chromalveolates, rhizarians, haptophytes and cryptomonads, thus linking nearly all photosynthetic lineages and raising the question of a possible unique origin of plastids. At its deepest level, the tree of eukaryotes now receives strong support for two monophyletic megagroups comprising most of the eukaryotic diversity.

Effects of naturally acidified seawater on seagrass calcareous epibionts.

Abstract: Surface ocean pH is likely to decrease by up to 0.4 units by 2100 due to the uptake of anthropogenic CO2 from the atmosphere. Short-term experiments have revealed that this degree of seawater acidification can alter calcification rates in certain planktonic and benthic organisms, although the effects recorded may be shock responses and the long-term ecological effects are unknown. Here, we show the response of calcareous seagrass epibionts to elevated CO2 partial pressure in aquaria and at a volcanic vent area where seagrass habitat has been exposed to high CO2 levels for decades. Coralline algae were the dominant contributors to calcium carbonate mass on seagrass blades at normal pH but were absent from the system at mean pH 7.7 and were dissolved in aquaria enriched with CO2. In the field, bryozoans were the only calcifiers present on seagrass blades at mean pH 7.7 where the total mass of epiphytic calcium carbonate was 90 per cent lower than that at pH 8.2. These findings suggest that ocean acidification may have dramatic effects on the diversity of seagrass habitats and lead to a shift in the biogeochemical cycling of both carbon and carbonate in coastal ecosystems dominated by seagrass beds.

Winter feeding of birds increases productivity in the subsequent breeding season.

Abstract: Supplementary food given to birds can have contemporary effects by reducing the risk of starvation, increasing survival and altering movements and reproductive performance. There is, however, a widely held perception that birds benefit from extra food over winter, but that it is better that they ‘look after themselves’ during breeding. Here we describe a landscape-scale experiment showing for the first time that the effects of increasing food availability only during the winter can be carried over to the subsequent breeding season. Even though food supplementation stopped six weeks prior to breeding, birds living on sites provisioned over winter had advanced laying dates and increased fledging success compared with birds living on unprovisioned sites. Thus, supplemental feeding of wild birds during winter, in a manner mimicking householders provisioning in gardens and backyards, has the potential to alter bird population dynamics by altering future reproductive performance. With levels of bird feeding by the public continuing to increase, the impacts of this additional food supply on wild bird populations may be considerable.

Evolutionary associations between nectar properties and specificity in bird pollination systems

Abstract: A long-standing paradigm in biology has been that hummingbirds and passerine birds select for different nectar properties in the plants they pollinate. Here we show that this dichotomy is false and a more useful distinction is that between specialized and generalized bird pollination systems. Flowers adapted for sunbirds, which are specialized passerine nectarivores, have nectar similar to that of hummingbird flowers in terms of volume (approx. 10–30 μl), concentration (approx. 15–25% w/w) and sucrose content (approx. 40–60% of total sugar). In contrast, flowers adapted to generalized bird pollinators are characterized by large volumes (approx. 40–100 μl) of extremely dilute (approx. 8–12%) nectar with minimal sucrose (approx. 0–5%). These differences in nectar traits are highly significant even when statistical analyses are based on phylogenetically separate pairwise comparisons between taxa. We present several hypotheses for the association between nectar properties and specificity in bird pollination systems.

Severe drought and calf survival in elephants.

Abstract: Climate change in Africa is expected to lead to a higher occurrence of severe droughts in semi-arid and arid ecosystems. Understanding how animal populations react to such events is thus crucial for addressing future challenges for wildlife management and conservation. We explored how gender, age, mother's experience and family group characteristics determined calf survival in an elephant population during a severe drought in Tanzania in 1993. Young males were particularly sensitive to the drought and calf loss was higher among young mothers than among more experienced mothers. We also report high variability in calf mortality between different family groups, with family groups that remained in the National Park suffering heavy calf loss, compared with the ones that left the Park. This study highlights how severe droughts can dramatically affect early survival of large herbivores and suggests that extreme climatic events might act as a selection force on vertebrate populations, allowing only individuals with the appropriate behaviour and/or knowledge to survive.

The colour of fossil feathers

Abstract: Feathers are complex integumentary appendages of birds and some other theropod dinosaurs. They are frequently coloured and function in camouflage and display. Previous investigations have concluded that fossil feathers are preserved as carbonized traces composed of feather-degrading bacteria. Here, an investigation of a colour-banded feather from the Lower Cretaceous Crato Formation of Brazil revealed that the dark bands are preserved as elongate, oblate carbonaceous bodies 1–2 μm long, whereas the light bands retain only relief traces on the rock matrix. Energy dispersive X-ray analysis showed that the dark bands preserve a substantial amount of carbon, whereas the light bands show no carbon residue. Comparison of these oblate fossil bodies with the structure of black feathers from a living bird indicates that they are the eumelanin-containing melanosomes. We conclude that most fossil feathers are preserved as melanosomes, and that the distribution of these structures in fossil feathers can preserve the colour pattern in the original feather. The discovery of preserved melanosomes opens up the possibility of interpreting the colour of extinct birds and other dinosaurs.

Spatial analysis improves species distribution modelling during range expansion

Abstract: Species distribution models (SDMs) assume equilibrium between species' distribution and the environment. However, this assumption can be violated under restricted dispersal and spatially autocorrelated environmental conditions. Here we used a model to simulate species' ranges expansion under two non-equilibrium scenarios, evaluating the performance of SDM coupled with spatial eigenvector mapping. The highest fit is for the models that include space, although the relative importance of spatial variables during the range expansion differs in the two scenarios. Incorporating space to the models was important only under colonization-lag non-equilibrium, under the expected scenario. Thus, mechanisms that generate range cohesion and determine species' distribution under climate changes can be captured by spatial modelling, with advantages compared with other techniques and in line with recent claims that SDMs have to account for more complex dynamic scenarios.

A fruit in the hand or two in the bush? Divergent risk preferences in chimpanzees and bonobos.

Abstract: Human and non-human animals tend to avoid risky prospects. If such patterns of economic choice are adaptive, risk preferences should reflect the typical decision-making environments faced by organisms. However, this approach has not been widely used to examine the risk sensitivity in closely related species with different ecologies. Here, we experimentally examined risk-sensitive behaviour in chimpanzees (Pan troglodytes )a nd bonobos (Pan paniscus), closely related species whose distinct ecologies are thought to be the major selective force shaping their unique behavioural repertoires. Because chimpanzees exploit riskier food sources in the wild, we predicted that they would exhibit greater tolerance for risk in choices about food. Results confirmed this prediction: chimpanzees significantly preferred the risky option, whereas bonobos preferred the fixed option. These results provide a relatively rare example of risk-prone behaviour in the context of gains and show how ecological pressures can sculpt economic decision making.

Genetic evidence for co-occurrence of chromosomal and thermal sex-determining systems in a lizard

Abstract: An individual's sex depends upon its genes (genotypic sex determination or GSD) in birds and mammals, but reptiles are more complex: some species have GSD whereas in others, nest temperatures determine offspring sex (temperature-dependent sex determination). Previous studies suggested that montane scincid lizards (Bassiana duperreyi, Scincidae) possess both of these systems simultaneously: offspring sex is determined by heteromorphic sex chromosomes (XX-XY system) in most natural nests, but sex ratio shifts suggest that temperatures override chromosomal sex in cool nests to generate phenotypically male offspring even from XX eggs. We now provide direct evidence that incubation temperatures can sex-reverse genotypically female offspring, using a DNA sex marker. Application of exogenous hormone to eggs also can sex-reverse offspring (oestradiol application produces XY as well as XX females). In conjunction with recent work on a distantly related lizard taxon, our study challenges the notion of a fundamental dichotomy between genetic and thermally determined sex determination, and hence the validity of current classification schemes for sex-determining systems in reptiles.

Climate and land use change impacts on plant distributions in Germany.

Abstract: We present niche-based modelling to project the distribution of 845 European plant species for Germany using three different models and three scenarios of climate and land use changes up to 2080. Projected changes suggested large effects over the coming decades, with consequences for the German flora. Even under a moderate scenario (approx. +2.2°C), 15–19% (across models) of the species we studied could be lost locally—averaged from 2995 grid cells in Germany. Models projected strong spatially varying impacts on the species composition. In particular, the eastern and southwestern parts of Germany were affected by species loss. Scenarios were characterized by an increased number of species occupying small ranges, as evidenced by changes in range-size rarity scores. It is anticipated that species with small ranges will be especially vulnerable to future climate change and other ecological stresses.

Dogs catch human yawns

Abstract: This study is the first to demonstrate that human yawns are possibly contagious to domestic dogs (Canis familiaris). Twenty-nine dogs observed a human yawning or making control mouth movements. Twenty-one dogs yawned when they observed a human yawning, but control mouth movements did not elicit yawning from any of them. The presence of contagious yawning in dogs suggests that this phenomenon is not specific to primate species and may indicate that dogs possess the capacity for a rudimentary form of empathy. Since yawning is known to modulate the levels of arousal, yawn contagion may help coordinate dog–human interaction and communication. Understanding the mechanism as well as the function of contagious yawning between humans and dogs requires more detailed investigation.

Predator-specific camouflage in chameleons

Abstract: A crucial problem for most animals is how to deal with multiple types of predator, which differ in their sensory capabilities and methods of prey detection. For animals capable of rapid colour change, one potential strategy is to change their appearance in relation to the threat posed by different predators. Here, we show that the dwarf chameleon, Bradypodion taeniabronchum, exhibits different colour responses to two predators that differ in their visual capabilities. Using a model of animal colour perception to gain a ‘predator's eye view’, we show that chameleons showed better background colour matching in response to birds than snakes, yet they appear significantly more camouflaged to the snake visual system because snakes have poorer colour discrimination.

Climate change adaptation for conservation in Madagascar

Abstract: Madagascar's imperilled biota are now experiencing the effects of a new threat—climate change ([Raxworthy et al . 2008][1]). With more than 90% endemism among plants, mammals, reptiles and amphibians, the stakes are high. The pristine landscapes that allowed this exceptional biodiversity to

Admixture determines genetic diversity and population differentiation in the biological invasion of a lizard species.

Abstract: Molecular genetic analyses show that introduced populations undergoing biological invasions often bring together individuals from genetically disparate native-range source populations, which can elevate genotypic variation if these individuals interbreed. Differential admixture among multiple native-range sources explains mitochondrial haplotypic diversity within and differentiation among invasive populations of the lizard Anolis sagrei. Our examination of microsatellite variation supports the hypothesis that lizards from disparate native-range sources, identified using mtDNA haplotypes, form genetically admixed introduced populations. Furthermore, within-population genotypic diversity increases with the number of sources and among-population genotypic differentiation reflects disparity in their native-range sources. If adaptive genetic variation is similarly restructured, then the ability of invasive species to adapt to new conditions may be enhanced.

Public information affects breeding dispersal in a colonial bird: kittiwakes cue on neighbours

Abstract: Habitat selection and dispersal behaviour are key processes in evolutionary ecology. Recent studies have suggested that individuals may use the reproductive performance of conspecifics as a source of public information on breeding patch quality for dispersal decisions, but experimental evidence is still limited for species breeding in aggregates, i.e. colonial species. We addressed this issue by manipulating the local breeding success of marked individuals and that of their neighbours on a series of breeding patches of a colonial seabird, the black-legged kittiwake (Rissa tridactyla). Based on previous observations in this species, we predicted that individuals that lost their eggs on successful patches would attend their nest and come back to it the year after at a higher rate than individuals that lost their eggs on patches where their neighbours were also in failure. As predicted, the attendance of breeders and prospectors was strongly affected by the local level of breeding success, resulting in differential site fidelity and recruitment. This suggests that individuals used information conveyed by conspecific breeding performance to make decisions relative to breeding site selection. This process can amplify the response of these populations to environmental change and may have contributed to the evolution of colonial breeding.

Avian migrants adjust migration in response to environmental conditions en route

Abstract: The onset of migration in birds is assumed to be primarily under endogenous control in long-distance migrants. Recently, climate changes appear to have been driving a rapid change in breeding area arrival. However, little is known about the climatic factors affecting migratory birds during the migration cycle, or whether recently reported phenological changes are caused by plastic behavioural responses or evolutionary change. Here, we investigate how environmental conditions in the wintering areas as well as en route towards breeding areas affect timing of migration. Using data from 1984 to 2004 covering the entire migration period every year from observatories located in the Middle East and northern Europe, we show that passage of the Sahara Desert is delayed and correlated with improved conditions in the wintering areas. By contrast, migrants travel more rapidly through Europe, and adjust their breeding area arrival time in response to improved environmental conditions en route. Previous studies have reported opposing results from a different migration route through the Mediterranean region (Italy). We argue that the simplest explanation for different phenological patterns at different latitudes and between migratory routes appears to be phenotypic responses to spatial variability in conditions en route.

Origin of tropical American burrowing reptiles by transatlantic rafting

Abstract: Populations of terrestrial or freshwater taxa that are separated by oceans can be explained by either oceanic dispersal or fragmentation of a previously contiguous land mass. Amphisbaenians, the worm lizards (approx. 165 species), are small squamate reptiles that are uniquely adapted to a burrowing lifestyle and inhabit Africa, South America, Caribbean Islands, North America, Europe and the Middle East. All but a few species are limbless and they rarely leave their subterranean burrows. Given their peculiar habits, the distribution of amphisbaenians has been assumed to be primarily the result of two land-mass fragmentation events: the split of the supercontinent Pangaea starting 200 Myr ago, separating species on the northern land mass (Laurasia) from those on the southern land mass (Gondwana), and the split of South America from Africa 100 Myr ago. Here we show with molecular evidence that oceanic dispersal—on floating islands—played a more prominent role, and that amphisbaenians crossed the Atlantic Ocean in the Eocene (40 Myr ago) resulting in a tropical American radiation representing one-half of all known amphisbaenian species. Until now, only four or five transatlantic dispersal events were known in terrestrial vertebrates. Significantly, this is the first such dispersal event to involve a group that burrows, an unexpected lifestyle for an oceanic disperser.

Prehistorical climate change increased diversification of a group of butterflies

Abstract: Satyrinae butterflies (Lepidoptera: Nymphalidae) and grasses (Poaceae) are very diverse and distributed worldwide. Most Satyrinae use grasses as host plants, but the temporal scale of this tight association is not known. Here, we present a phylogenetic study of Satyrinae butterflies and related groups, based on 5.1 kilobases from six gene regions and 238 morphological characters for all major lineages in the ‘satyrine clade’. Estimates of divergence times calibrated using a fossil from the Late Oligocene indicate that the species-rich tribe Satyrini diversified to its current 2200 species simultaneously with the expansion and radiation of grasses during the dramatic cooling and drying up of the Earth in the Oligocene. We suggest that the adaptive radiation of grass feeders in Satyrini has been facilitated by the ubiquitousness of grasses since 25 Myr ago, which was triggered by a change in global climate.

The dangers of ignoring stock complexity in fishery management: the case of the North Sea cod.

Abstract: The plight of the marine fisheries is attracting increasing attention as unsustainably high exploitation levels, exacerbated by more extreme climatic conditions, are driving stocks to the point of collapse. The North Atlantic cod (Gadus morhua), a species which until recently formed a major component of the demersal fisheries, has undergone significant declines across its range. The North Sea stock is typical of many, with a spawning stock biomass that has remained below the safe biological limit since 2000 and recruitment levels near the lowest on record. Cod within the North Sea are currently managed as a single stock, and yet mounting empirical evidence supports the existence of a metapopulation of regionally variable, genetically distinct, sub-stocks. Applying the same management strategies to multiple stocks that differ in their resilience to exploitation inevitably results in the overfishing and likely collapse of the weaker components. Indeed, recent studies have identified two North Sea spawning stocks that have undergone disproportionally large collapses with very substantial reductions in egg production. Similarly affected cod stocks in the northwest Atlantic have shown little evidence of recovery, despite fishery closures. The possible implications of ignoring sub-structuring within management units for biocomplexity, local adaptation and ecosystem stability are considered.

Grooming reciprocation among female primates: a meta-analysis

Abstract: The theory of reciprocal altruism offers an explanation for the evolution of altruistic behaviours among unrelated animals. Among primates, grooming is one of the most common altruistic behaviours. Primates have been suggested to exchange grooming both for itself and for rank-related benefits. While previous meta-analyses have shown that they direct their grooming up the hierarchy and exchange it for agonistic support, no comprehensive evaluation of grooming reciprocation has been made. Here we report on a meta-analysis of grooming reciprocation among female primates based on 48 social groups belonging to 22 different species and 12 genera. The results of this meta-analysis showed that female primates groom preferentially those group mates that groom them most. To the extent allowed by the availability of kinship data, this result holds true when controlling for maternal kinship. These results, together with previous findings, suggest that primates are indeed able to exchange grooming both for itself and for different rank-related benefits.

A threat to coral reefs multiplied? Four species of crown-of-thorns starfish

Abstract: In the face of ever-increasing threats to coral reef ecosystems, it is essential to understand the impact of natural predators in order to devise appropriate management strategies. Destructive population explosions of the crown-of-thorns starfish Acanthaster planci have devastated coral reefs throughout the Indo-Pacific for decades. But despite extensive research, the causes of outbreaks are still unclear. An important consideration in this research is that A. planci has been regarded as a single taxonomic entity. Using molecular data from its entire distribution, we find that A. planci is in fact a species complex. This discovery has important consequences for future coral reef research, and might prove critical for successful reef conservation management.

Contemporary perspectives on the niche that can improve models of species range shifts under climate change.

Abstract: Pioneering efforts to predict shifts in species distribution under climate change used simple models based on the correlation between contemporary environmental factors and distributions. These models make predictions at coarse spatial scales and assume the constancy of present correlations between environment and distribution. Adaptive management of climate change impacts requires models that can make more robust predictions at finer spatio-temporal scales by accounting for processes that actually affect species distribution on heterogeneous landscapes. Mechanistic models of the distribution of both species and vegetation types have begun to emerge to meet these needs. We review these developments and highlight how recent advances in our understanding of relationships among the niche concept, species diversity and community assembly point the way towards more effective models for the impacts of global change on species distribution and community diversity.

Golden hamsters are nocturnal in captivity but diurnal in nature

Abstract: Daily activity rhythms are nearly universal among animals and their specific pattern is an adaptation of each species to its ecological niche. Owing to the extremely consistent nocturnal patterns o...

The effect of social facilitation on foraging success in vultures: a modelling study.

Abstract: The status of many Gyps vulture populations are of acute conservation concern as several show marked and rapid decline. Vultures rely heavily on cues from conspecifics to locate carcasses via local enhancement. A simulation model is developed to explore the roles vulture and carcass densities play in this system, where information transfer plays a key role in locating food. We find a sigmoid relationship describing the probability of vultures finding food as a function of vulture density in the habitat. This relationship suggests a threshold density below which the foraging efficiency of the vulture population will drop rapidly towards zero. Management strategies should closely study this foraging system in order to maintain effective foraging densities.

Sleeping outside the box: electroencephalographic measures of sleep in sloths inhabiting a rainforest

Abstract: The functions of sleep remain an unresolved question in biology. One approach to revealing sleep's purpose is to identify traits that explain why some species sleep more than others. Recent compara...