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Open AccessJournal ArticleDOI

An evaluation and replication of miRNAs with disease stage and colorectal cancer-specific mortality

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TLDR
The findings illustrate the need for a large sample to evaluate the association of miRNAs with survival and disease stage in order to determine associations by tumor site.
Abstract
MicroRNAs (miRNAs) have been implicated in colorectal cancer (CRC) development and associated with prognostic indicators such as disease stage and survival. Prognostic associations are often based on few individuals and imprecise. In this study, we utilize population-based data from 1,141 CRC cases to replicate previously reported associations between 121 miRNAs and disease stage and survival. The Agilent Human miRNA Microarray V19.0 was used to generate miRNA data following a stringent quality control protocol. Assessment of survival was done using Cox Proportional Hazard models adjusting for age, disease stage and tumor molecular phenotype. Five miRNAs were associated with more advanced disease stage; hsa-miR-145-5p and hsa-miR-31-5p showed increased expression with more advanced tumor stage, while hsa-miR-200b-3p, hsa-miR-215 and hsa-miR-451a had decreased expression with more advanced tumors. Thirteen miRNAs were associated with CRC mortality among individuals diagnosed with colon cancer while 14 were associated with CRC mortality after a diagnosis with rectal cancer. Strongest associations were observed for those miRNAs that were expressed in a small subset of tumors. Most notable associations were for hsa-miR-145-3p [hazard ratio (HR) 2.94, 95% confidence interval (CI) 1.54, 5.61], and hsa-miR-9-3p (HR 10.28, 95% CI 1.31, 80.84) with colon cancer and hsa-miR-335-5p (HR 0.17, 95% CI 0.05, 0.54) for rectal cancer. hsa-miR-374a-5p, hsa-miR-570-3p and hsa-miR-18a-5p significantly reduced the hazard of dying for all cases, regardless of tumor site. Our findings illustrate the need for a large sample to evaluate the association of miRNAs with survival and disease stage in order to determine associations by tumor site.

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Journal ArticleDOI

Emerging roles of circRNA_001569 targeting miR-145 in the proliferation and invasion of colorectal cancer.

TL;DR: It is shown that hsa_circ_001569 acted as a positive regulator in cell proliferation and invasion of colorectal cancer (CRC) and was identified as a sponge of miR-145 and up-regulatedMiRNAs functional targets E2F5, BAG4 and FMNL2.
Journal ArticleDOI

LncRNA HOTAIR: A master regulator of chromatin dynamics and cancer.

TL;DR: HX antisense intergenic RNA (HOTAIR) is a recently discovered long non-coding RNA that plays critical role in gene regulation and chromatin dynamics, appears to be misregulated in a variety of cancers.
Journal ArticleDOI

MicroRNAs in the etiology of colorectal cancer: pathways and clinical implications.

TL;DR: The roles of oncogenic miRNAs (oncomiRs), tumor suppressive miRN as well as miRNA regulators in colorectal cancer are reviewed and their stability in patient-derived samples and ease of detection with standard and novel techniques are discussed.
Journal ArticleDOI

NanoStringDiff: a novel statistical method for differential expression analysis based on NanoString nCounter data.

TL;DR: A novel DE detection method is developed based on NanoString nCounter data that considers a generalized linear model of the negative binomial family to characterize count data and allows for multifactor design and performs better than existing methods.
Journal ArticleDOI

MicroRNA-31 initiates lung tumorigenesis and promotes mutant KRAS-driven lung cancer

TL;DR: It is determined that miR-31 is overexpressed in human lung adenocarcinoma and this overexpression independently correlates with decreased patient survival and is distinguished as a driver of lung tumorigenesis that promotes mutant KRAS-mediated oncogenesis and reveals that mi R-31 directly targets and reduces expression of negative regulators of RAS/MAPK signaling.
References
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Journal ArticleDOI

Plasma microRNAs are promising novel biomarkers for early detection of colorectal cancer.

TL;DR: Investigation of whether plasma miRNAs can be used as biomarkers for the early detection of colorectal carcinoma found that plasma miR‐29a and miR-92a have significant diagnostic value for advanced neoplasia and combined ROC analyses suggest that they have strong potential as novel noninvasive biomarkers.
Journal ArticleDOI

Identification by Real-time PCR of 13 mature microRNAs differentially expressed in colorectal cancer and non-tumoral tissues

TL;DR: The results suggest that miRNA expression profile could have relevance to the biological and clinical behavior of colorectal neoplasia and the expression level of miR-31 was correlated with the stage of CRC tumor.
Book ChapterDOI

miRBase:The MicroRNA Sequence Database

TL;DR: The methods outlined in this chapter describe these functions of the miRBase Sequence database, which provides a user-friendly web interface for miRNA data, and provides a confidential gene-naming service.
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