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Breaking the rules: bacteria that use several DNA polymerase IIIs

Charles S. McHenry
- 01 May 2011 - 
- Vol. 12, Iss: 5, pp 408-414
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TLDR
A complete understanding of complex bacterial replicases will allow the simultaneous biochemical screening of all their components and, thus, the identification of new antibacterial compounds.
Abstract
Studies using Escherichia coli DNA polymerase (Pol) III as the prototype for bacterial DNA replication have suggested that—in contrast to eukaryotes—one replicase performs all of the main functions at the replication fork. However, recent studies have revealed that replication in other bacteria requires two forms of Pol III, one of which seems to extend RNA primers by only a few nucleotides before transferring the product to the other polymerase—an arrangement analogous to that in eukaryotes. Yet another group of bacteria encode a second Pol III (ImuC), which apparently replaces a Pol Y-type polymerase (Pol V) that is required for induced mutagenesis in E. coli. A complete understanding of complex bacterial replicases will allow the simultaneous biochemical screening of all their components and, thus, the identification of new antibacterial compounds.

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Journal ArticleDOI

DNA Replicases from a Bacterial Perspective

TL;DR: This review focuses on a critical evaluation of recent literature and concepts pertaining to the above issues and suggests specific areas that require further investigation.
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DNA replication fidelity in Escherichia coli: a multi‐DNA polymerase affair

TL;DR: This review is concerned with the mechanisms underlying the fidelity of the chromosomal replication in the model system Escherichia coli by DNA polymerase III holoenzyme, with further emphasis on participation of the other, accessory DNA polymerases, of which E. coli contains four (Pols I, II, IV, and V).
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DNA Repair and Genome Maintenance in Bacillus subtilis

TL;DR: A review of the function, regulation, and molecular mechanisms of DNA repair and mutagenesis in Gram-positive bacteria, with a strong emphasis on B. subtilis is presented.
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Asymmetric Context-Dependent Mutation Patterns Revealed through Mutation–Accumulation Experiments

TL;DR: The influence of context-dependent mutation on genome architecture is strongest in M. florum, consistent with the reduced efficiency of selection in organisms with low effective population size.
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Evaluating evolutionary models of stress-induced mutagenesis in bacteria.

TL;DR: This work evaluates existing models for the evolution of stress-induced mutagenesis and presents a new model arguing that it evolves as a result of a complex interplay between direct selection for increase stress tolerance, second-order selection for increased evolvability and genetic drift.
References
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Journal ArticleDOI

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Compilation, alignment, and phylogenetic relationships of DNA polymerases

TL;DR: This is an update of an earlier compilation and alignment of DNA polymerase sequences (Ito and Braithwaite, 1991) that attempted to compile complete sequences, to facilitate the identification of conserved and viable regions of the DNA polymerases.
Journal ArticleDOI

Cellular DNA replicases: components and dynamics at the replication fork.

TL;DR: A heteropentameric AAA+ clamp-loading machine that couples ATP hydrolysis to load circular clamp proteins onto DNA and twin polymerases and clamps coordinate their actions to form a replisome machine that advances the replication fork.
Journal ArticleDOI

Yeast DNA polymerase ε participates in leading-strand DNA replication

TL;DR: A derivative of yeast DNA polymerase ϵ is constructed that retains high replication activity but has strongly reduced replication fidelity, particularly for thymine-deoxythymidine 5'-monophosphate (T-dTMP) but not adenine-deoxyadenosine 5-monoph phosphate (A-dAMP) mismatches.
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