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Open AccessJournal ArticleDOI

Epigenome-Wide Analysis of Methylation Changes in the Sequence of Gallstone Disease, Dysplasia, and Gallbladder Cancer.

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TLDR
This study investigates the epigenetic changes along the model of GBC carcinogenesis represented by the sequence gallstone disease → dysplasia → GBC in Chile, the country with the highest incidence of G BC worldwide.
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This article is published in Hepatology.The article was published on 2021-06-01 and is currently open access. It has received 21 citations till now. The article focuses on the topics: Dysplasia & DNA methylation.

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Gallbladder cancer

TL;DR: This PrimeView highlights the mechanisms of gallbladder cancer and summarizes its epidemiology, diagnosis and management and accompanies the Primer on this topic by Roa and colleagues.
Journal ArticleDOI

Gallbladder cancer

TL;DR: This Primer by Roa and colleagues summarizes the epidemiology, mechanisms, diagnosis and treatment of gallbladder cancer, and discusses patient quality of life and open research questions for this disease.
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Subtypes of Native American ancestry and leading causes of death

TL;DR: After an aggregate-data study based on genome-wide genotype data from 1805 admixed Chileans and 639,789 deaths, an identified association with gallbladder cancer is validated relying on individual data from 64 gallbladders cancer patients, with and without a family history, and 170 healthy controls.
References
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Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries

TL;DR: A status report on the global burden of cancer worldwide using the GLOBOCAN 2018 estimates of cancer incidence and mortality produced by the International Agency for Research on Cancer, with a focus on geographic variability across 20 world regions.
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Fast gapped-read alignment with Bowtie 2

TL;DR: Bowtie 2 combines the strengths of the full-text minute index with the flexibility and speed of hardware-accelerated dynamic programming algorithms to achieve a combination of high speed, sensitivity and accuracy.
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HTSeq—a Python framework to work with high-throughput sequencing data

TL;DR: This work presents HTSeq, a Python library to facilitate the rapid development of custom scripts for high-throughput sequencing data analysis, and presents htseq-count, a tool developed with HTSequ that preprocesses RNA-Seq data for differential expression analysis by counting the overlap of reads with genes.
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GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers.

TL;DR: By separating SCNA profiles into underlying arm-level and focal alterations, the estimation of background rates for each category is improved, and a probabilistic method for defining the boundaries of selected-for SCNA regions with user-defined confidence is described.
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AdapterRemoval v2: rapid adapter trimming, identification, and read merging.

TL;DR: It is shown that AdapterRemoval v2 compares favorably with existing tools, while offering superior throughput to most alternatives examined here, both for single and multi-threaded operations.
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