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Family Genomoviridae: 2021 taxonomy update

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TLDR
The most recent taxonomic update of the Genomoviridae is presented in this article, including the creation of one new genus, Gemytripvirus, and classification of ~420 new genomovirus into 164 new species.
Abstract
The family Genomoviridae (phylum Cressdnaviricota, class Repensiviricetes, order Geplafuvirales) includes viruses with circular single-stranded DNA genomes encoding two proteins, the capsid protein and the rolling-circle replication initiation protein. The genomes of the vast majority of members in this family have been sequenced directly from diverse environmental or animal- and plant-associated samples, but two genomoviruses have been identified infecting fungi. Since the last taxonomic update of the Genomoviridae, a number of new members of this family have been sequenced. Here, we report on the most recent taxonomic update, including the creation of one new genus, Gemytripvirus, and classification of ~420 new genomoviruses into 164 new species. We also announce the adoption of the “Genus + freeform epithet” binomial system for the naming of all 236 officially recognized species in the family Genomoviridae. The updated taxonomy presented in this article has been accepted by the International Committee on Taxonomy of Viruses (ICTV).

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Journal ArticleDOI

Mycovirus Diversity and Evolution Revealed/Inferred from Recent Studies.

TL;DR: Phylogenetic analyses and the discovery of natural and experimental cross-kingdom infections suggest that horizontal virus transfer may have occurred and continue to occur between fungi and other kingdoms.
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Diverse single-stranded DNA viruses identified in New Zealand (Aotearoa) South Island robin (Petroica australis) fecal samples

TL;DR: In this paper , the diversity of single-stranded DNA viruses associated with South Island robins in a small, isolated population on Nukuwaiata Island was surveyed. But little research has been done to identify viruses in this species.
Journal ArticleDOI

Diverse single-stranded DNA viruses identified in New Zealand (Aotearoa) South Island robin (Petroica australis) fecal samples.

TL;DR: In this paper, the diversity of single-stranded DNA viruses associated with South Island robins in a small, isolated population on Nukuwaiata Island was surveyed. And a novel group of viruses most closely related genomoviruses was identified.
Journal ArticleDOI

Viral Metagenomic Data Analyses of Five New World Bat Species from Argentina: Identification of 35 Novel DNA Viruses

TL;DR: The diversity of DNA viruses of five arthropodophagous bat species from Argentina was investigated using metagenomics and 35 complete genome sequences of novel viruses were characterized, providing new insights into the global diversity of bat viruses in poorly studied species.
References
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Journal ArticleDOI

ModelFinder: fast model selection for accurate phylogenetic estimates

TL;DR: ModelFinder is presented, a fast model-selection method that greatly improves the accuracy of phylogenetic estimates by incorporating a model of rate heterogeneity across sites not previously considered in this context and by allowing concurrent searches of model space and tree space.
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trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

TL;DR: TrimAl is a tool for automated alignment trimming, which is especially suited for large-scale phylogenetic analyses and can automatically select the parameters to be used in each specific alignment so that the signal-to-noise ratio is optimized.
Journal ArticleDOI

MAFFT online service: Multiple sequence alignment, interactive sequence choice and visualization

TL;DR: The Web interface for recently developed options for large data and interactive usage to refine sequence data sets and MSAs for multiple sequence alignment are explained.
Journal ArticleDOI

SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation

TL;DR: Sequence Demarcation Tool (SDT) as discussed by the authors is a free user-friendly computer program that aims to provide a robust and highly reproducible means of objectively using pairwise genetic identity calculations to classify any set of nucleotide or amino acid sequences.
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