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Journal ArticleDOI

Life in the “Plastisphere”: Microbial Communities on Plastic Marine Debris

TLDR
Pits visualized in the PMD surface conformed to bacterial shapes suggesting active hydrolysis of the hydrocarbon polymer, implying that plastic serves as a novel ecological habitat in the open ocean.
Abstract
Plastics are the most abundant form of marine debris, with global production rising and documented impacts in some marine environments, but the influence of plastic on open ocean ecosystems is poorly understood, particularly for microbial communities. Plastic marine debris (PMD) collected at multiple locations in the North Atlantic was analyzed with scanning electron microscopy (SEM) and next-generation sequencing to characterize the attached microbial communities. We unveiled a diverse microbial community of heterotrophs, autotrophs, predators, and symbionts, a community we refer to as the “Plastisphere”. Pits visualized in the PMD surface conformed to bacterial shapes suggesting active hydrolysis of the hydrocarbon polymer. Small-subunit rRNA gene surveys identified several hydrocarbon-degrading bacteria, supporting the possibility that microbes play a role in degrading PMD. Some Plastisphere members may be opportunistic pathogens (the authors, unpublished data) such as specific members of the genus Vib...

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Plastic Pollution in the World's Oceans: More than 5 Trillion Plastic Pieces Weighing over 250,000 Tons Afloat at Sea

TL;DR: The total number of plastic particles and their weight floating in the world's oceans is estimated from 24 expeditions across all five sub-tropical gyres, costal Australia, Bay of Bengal and the Mediterranean Sea conducting surface net tows and visual survey transects of large plastic debris.
Journal ArticleDOI

Metagenomic biomarker discovery and explanation

TL;DR: In this article, a new method for metagenomic biomarker discovery by way of class comparison, tests of biological consistency and effect size estimation is described and validated, which addresses the challenge of finding organisms, genes, or pathways that consistently explain the differences between two or more microbial communities.
Journal ArticleDOI

Plastic debris in the open ocean

TL;DR: Using data from the Malaspina 2010 circumnavigation, regional surveys, and previously published reports, this work shows a worldwide distribution of plastic on the surface of the open ocean, mostly accumulating in the convergence zones of each of the five subtropical gyres with comparable density.
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Microplastics in freshwater systems: A review of the emerging threats, identification of knowledge gaps and prioritisation of research needs

TL;DR: The issue of microplastics in freshwater systems is reviewed to summarise current understanding, identify knowledge gaps and suggest future research priorities.
Journal ArticleDOI

Plastic and Human Health: A Micro Issue?

TL;DR: There is potential for microplastics to impact human health, and assessing current exposure levels and burdens is key to guide future research into the potential mechanisms of toxicity and hence therein possible health effects.
References
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Journal ArticleDOI

Search and clustering orders of magnitude faster than BLAST

Robert C. Edgar
- 01 Oct 2010 - 
TL;DR: UCLUST is a new clustering method that exploits USEARCH to assign sequences to clusters and offers several advantages over the widely used program CD-HIT, including higher speed, lower memory use, improved sensitivity, clustering at lower identities and classification of much larger datasets.
Journal ArticleDOI

Metagenomic biomarker discovery and explanation

TL;DR: A new method for metagenomic biomarker discovery is described and validates by way of class comparison, tests of biological consistency and effect size estimation to address the challenge of finding organisms, genes, or pathways that consistently explain the differences between two or more microbial communities.
Journal ArticleDOI

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

TL;DR: SILVA (from Latin silva, forest), was implemented to provide a central comprehensive web resource for up to date, quality controlled databases of aligned rRNA sequences from the Bacteria, Archaea and Eukarya domains.
Journal ArticleDOI

Microplastics in the marine environment

TL;DR: The mechanisms of generation and potential impacts of microplastics in the ocean environment are discussed, and the increasing levels of plastic pollution of the oceans are understood, it is important to better understand the impact of microPlastic in the Ocean food web.
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