Rhizosphere microbiome metagenomics of gray mangroves (Avicennia marina) in the Red Sea.
Hanin S. Alzubaidy,Magbubah Essack,Tareq M. Malas,Ameerah Bokhari,Olaa Amin Motwalli,Frederick K. Kamanu,Suhaiza Ahmad Jamhor,Noor Azlin Mokhtar,André Antunes,Marta Filipa Simões,Intikhab Alam,Salim Bougouffa,Feras F. Lafi,Vladimir B. Bajic,John A.C. Archer +14 more
TLDR
This is the first metagenomic study on the microbiome of mangroves in the Red Sea, and the first application of unbiased 454-pyrosequencing to study the rhizosphere microbiome associated with Avicennia marina, providing the first insights into the range of functions and microbial diversity in the Rhizosphere and soil sediments of gray mangrove (A. marina) in theRed Sea.About:
This article is published in Gene.The article was published on 2016-02-01 and is currently open access. It has received 114 citations till now. The article focuses on the topics: Rhizosphere & Avicennia marina.read more
Citations
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Rhizosphere microbiome: Engineering bacterial competitiveness for enhancing crop production.
Ashwani Kumar,Anamika Dubey +1 more
TL;DR: In this paper, the authors focused on shaping rhizosphere microbiome of susceptible host plant from resistant plant which comprises of specific type of microbial community with multiple potential benefits and targeted CRISPR/Cas9 based strategies for the manipulation of susceptibility genes in crop plants for improving plant health.
Journal ArticleDOI
The rhizosphere microbiome: Significance in rhizoremediation of polyaromatic hydrocarbon contaminated soil
TL;DR: This review summarizes recent knowledge of PAH degradation in the rhizosphere in the process of plant-microbiome interactions based on emerging omics approaches such as metagenomics, metatranscriptomics, metabolomics and metaproteomics and insight into the biochemical and molecular modification of the meta-organisms to maximize rhizoremediation activity.
Journal ArticleDOI
Soil and Rhizosphere Associated Fungi in Gray Mangroves (Avicennia marina) from the Red Sea--A Metagenomic Approach.
Marta Filipa Simões,André Antunes,Cristiane Angélica Ottoni,Mohammad Shoaib Amini,Intikhab Alam,Hanin S. Alzubaidy,Noor-Azlin Mokhtar,John A.C. Archer,Vladimir B. Bajic +8 more
TL;DR: This study analyzed metagenomic datasets from gray mangrove rhizosphere and bulk soil samples collected in the Red Sea coast to obtain a snapshot of their fungal communities, and indicates the presence of several species on this mycobiome that were not previously reported as mangroves-associated.
Journal ArticleDOI
Bacterial Abilities and Adaptation Toward the Rhizosphere Colonization
TL;DR: This study identified major bacterial groups and their potential abilities to occupy the sugarcane rhizosphere, and indicated that polygalacturonase activity and HGT events may be important features for Rhizosphere colonization.
Journal ArticleDOI
Comparative mangrove metagenome reveals global prevalence of heavy metals and antibiotic resistome across different ecosystems.
Madangchanok Imchen,Ranjith Kumavath,Debmalya Barh,Debmalya Barh,Aline B.M. Vaz,Aristóteles Góes-Neto,Sandeep Tiwari,Preetam Ghosh,Alice R. Wattam,Vasco Azevedo +9 more
TL;DR: Comparison of samples collected from a variety of habitats shows that genes involved in resistance to both heavy metals and antibiotics are ubiquitous, irrespective of the ecosystem examined.
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