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Open AccessJournal ArticleDOI

Yeast Spontaneous Mutation Rate and Spectrum Vary with Environment.

Haoxuan Liu, +1 more
- 20 May 2019 - 
- Vol. 29, Iss: 10, pp 1584
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TLDR
Observations indicate that environmental changes, which are ubiquitous in nature, influence not only natural selection, but also the amount and type of mutations available to selection, and suggest that ignoring the latter impact, as is currently practiced, may mislead evolutionary inferences.
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This article is published in Current Biology.The article was published on 2019-05-20 and is currently open access. It has received 75 citations till now. The article focuses on the topics: Mutation rate & Mutation (genetic algorithm).

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Journal ArticleDOI

Chance and necessity in the pleiotropic consequences of adaptation for budding yeast

TL;DR: It is found that evolution led to diverse pleiotropic fitness gains and losses, driven by multiple types of mutations, and whether a population evolves towards a specialist or a generalist phenotype is heavily influenced by chance.
Journal ArticleDOI

Antagonistic pleiotropy conceals molecular adaptations in changing environments.

TL;DR: In this article, a lower nonsynonymous to synonymous rate ratio was observed in antagonistic changing environments than in the corresponding constant environments, and the population dynamics of mutations supported the hypothesis.
Journal ArticleDOI

Accurate Tracking of the Mutational Landscape of Diploid Hybrid Genomes

TL;DR: An integrated experimental and computational workflow to accurately track the mutational landscape of yeast diploid hybrids (MuLoYDH) in terms of single-nucleotide variants, small insertions/deletions, copy-number variants, aneuploidies, and loss-of-heterozygosity is presented.
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Epigenetic modifications affect the rate of spontaneous mutations in a pathogenic fungus.

TL;DR: In this article, the direct impact of epigenetic modifications and temperature stress on mitotic mutation rates in a fungal pathogen using a mutation accumulation approach was determined, and it was shown that epigenetic modification and environmental conditions significantly increased the mutation rate.
References
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Journal Article

R: A language and environment for statistical computing.

R Core Team
- 01 Jan 2014 - 
TL;DR: Copyright (©) 1999–2012 R Foundation for Statistical Computing; permission is granted to make and distribute verbatim copies of this manual provided the copyright notice and permission notice are preserved on all copies.
Journal ArticleDOI

Fast and accurate short read alignment with Burrows–Wheeler transform

TL;DR: Burrows-Wheeler Alignment tool (BWA) is implemented, a new read alignment package that is based on backward search with Burrows–Wheeler Transform (BWT), to efficiently align short sequencing reads against a large reference sequence such as the human genome, allowing mismatches and gaps.
Journal ArticleDOI

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

TL;DR: The GATK programming framework enables developers and analysts to quickly and easily write efficient and robust NGS tools, many of which have already been incorporated into large-scale sequencing projects like the 1000 Genomes Project and The Cancer Genome Atlas.
Book

The Neutral Theory of Molecular Evolution

Motoo Kimura
TL;DR: The neutral theory as discussed by the authors states that the great majority of evolutionary changes at the molecular level are caused not by Darwinian selection but by random drift of selectively neutral mutants, which has caused controversy ever since.
Journal ArticleDOI

Mitochondria, Oxidants, and Aging

TL;DR: The evidence is reviewed that both supports and conflicts with the free radical theory of aging and the growing link between mitochondrial metabolism, oxidant formation, and the biology of aging is examined.
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