Showing papers on "Water cluster published in 2020"

Infrared spectroscopy of neutral water clusters at finite temperature: Evidence for a noncyclic pentamer

Abstract: Infrared spectroscopic study of neutral water clusters is crucial to understanding of the hydrogen-bonding networks in liquid water and ice. Here we report infrared spectra of size-selected neutral water clusters, (H2O) n (n = 3-6), in the OH stretching vibration region, based on threshold photoionization using a tunable vacuum ultraviolet free-electron laser. Distinct OH stretch vibrational fundamentals observed in the 3,500-3,600-cm-1 region of (H2O)5 provide unique spectral signatures for the formation of a noncyclic pentamer, which coexists with the global-minimum cyclic structure previously identified in the gas phase. The main features of infrared spectra of the pentamer and hexamer, (H2O) n (n = 5 and 6), span the entire OH stretching band of liquid water, suggesting that they start to exhibit the richness and diversity of hydrogen-bonding networks in bulk water.

Importance of self-interaction-error removal in density functional calculations on water cluster anions

Abstract: Accurate description of the excess charge in water cluster anions is challenging for standard semi-local and (global) hybrid density functional approximations (DFAs). Using the recent unitary invariant implementation of the Perdew-Zunger self-interaction correction (SIC) method using Fermi-Lowdin orbitals, we assess the effect of self-interaction error on the vertical detachment energies of water cluster anions with the local spin density approximation (LSDA), Perdew-Burke-Ernzerhof (PBE) generalized gradient approximation, and the strongly constrained and appropriately normed (SCAN) meta-GGA functionals. Our results show that for the relative energies of isomers with respect to reference CCSD(T) values, the uncorrected SCAN functional has the smallest deviation of 21 meV, better than that for the MP2 method. The performance of SIC-SCAN is comparable to that of MP2 and is better than SIC-LSDA and SIC-PBE, but it reverses the ordering of the two lowest isomers for water hexamer anions. Removing self interaction error (SIE) corrects the tendency of LSDA, PBE, and SCAN to over-bind the extra electron. The vertical detachment energies (VDEs) of water cluster anions, obtained from the total energy differences of corresponding anion and neutral clusters, are significantly improved by removing self-interaction and are better than the hybrid B3LYP functional, but fall short of MP2 accuracy. Removing SIE results in substantial improvement in the position of the eigenvalue of the extra electron. The negative of the highest occupied eigenvalue after SIC provides an excellent approximation to the VDE, especially for SIC-PBE where the mean absolute error with respect to CCSD(T) is only 17 meV, the best among all approximations compared in this work.

Absorption spectra of benzoic acid in water at different pH and in the presence of salts: insights from the integration of experimental data and theoretical cluster models.

Abstract: The absorption spectra of molecular organic chromophores in aqueous media are of considerable importance in environmental chemistry. In this work, the UV-vis spectra of benzoic acid (BA), the simplest aromatic carboxylic acid, in aqueous solutions at varying pH and in the presence of salts are measured experimentally. The solutions of different pH provide insights into the contributions from both the non-dissociated acid molecule and the deprotonated anionic species. The microscopic interpretation of these spectra is then provided by quantum chemical calculations for small cluster models of benzoic species (benzoic acid and benzoate anion) with water molecules. Calculations of the UV-vis absorbance spectra are then carried out for different clusters such as C6H5COOH·(H2O)n and C6H5COO-·(H2O)n, where n = 0-8. The following main conclusions from these calculations and the comparison to experimental results can be made: (i) the small water cluster yields good quantitative agreement with observed solution experiments; (ii) the main peak position is found to be very similar at different levels of theory and is in excellent agreement with the experimental value, however, a weaker feature about 1 eV to lower energy (red shift) of the main peak is correctly reproduced only by using high level of theory, such as Algebraic Diagrammatic Construction (ADC); (iii) dissociation of the BA into ions is found to occur with a minimum of water molecules of n = 8; (iv) the deprotonation of BA has an influence on the computed spectrum and the energetics of the lowest energy electronic transitions; (v) the effect of the water on the spectra is much larger for the deprotonated species than for the non-dissociated acid. It was found that to reproduce experimental spectrum at pH 8.0, additional continuum representation for the extended solvent environment must be included in combination with explicit solvent molecules (n ≥ 3); (vi) salts (NaCl and CaCl2) have minimal effect on the absorption spectrum and; (vii) experimental results showed that B-band of neutral BA is not sensitive to the solvent effects whereas the effect of the water on the C-band is significant. The water effects blue-shift this band up to ∼0.2 eV. Overall, the results demonstrate the ability to further our understanding of the microscopic interpretation of the electronic structure and absorption spectra of BA in aqueous media through calculations restricted to small cluster models.

Polyoxometalate-Based Metal–Organic Frameworks with Unique High-Nuclearity Water Clusters

Abstract: The maximum exposure of polyoxometalates (POMs) is of great significance to enhance the catalytic performance of HKUST-1 with incorporated Keggin-type POMs. Herein, two phosphovanadomolybdates were encapsulated into the HKUST-1 via a hydrothermal method to obtain two polyoxometalate-based metal-organic frameworks, formulated as [Cu12(BTC)8(H2O)12][H4PMo11VO40]@(H2O)30 (1) and [Cu12(BTC)8(H2O)12][H5PMo10V2O40]@(H2O)49 (2). Single-crystal X-ray diffraction analysis indicates that two compounds contain unique high-nuclearity water clusters without organic counter cations. The octahedral-shaped water cluster (H2O)30 was constructed from square-pyramid-shaped (H2O)5 for compound 1, while the huge cage-shaped water cluster (H2O)49 of compound 2 consisted of crown-like (H2O)8 and one water molecule, which substitute the organic counter cations involved in the structural construction. More importantly, after removing the water clusters via simple heat treatment, the active sites of the two compounds were fully exposed, leading to good catalytic activities for both benzene hydroxylation reaction and oxidative desulfurization. Furthermore, the catalytic test confirmed that compound 2 may be a bifunctional heterogeneous catalyst with great promise for both benzene hydroxylation and oxidative desulfurization.

Measurement of ammonia, amines and iodine compounds using protonated water cluster chemical ionization mass spectrometry

Abstract: . Here we describe the design and performance of a new water cluster chemical ionization–atmospheric pressure interface time-of-flight mass spectrometer (CI-APi-TOF). The instrument selectively measures trace gases with high proton affinity such as ammonia and dimethylamine, which are important for atmospheric new particle formation and growth. Following the instrument description and characterization, we demonstrate successful measurements at the CERN CLOUD (Cosmics Leaving OUtdoor Droplets) chamber where very low ammonia background levels of ∼4 pptv were achieved (at 278 K and 80 % RH). The limit of detection of the water cluster CI-APi-TOF is estimated to be ∼0.5 pptv for ammonia. Although no direct calibration was performed for dimethylamine (DMA), we estimate its detection limit is at least 3 times lower. Due to the short ion–molecule reaction time and high reagent ion concentrations, ammonia mixing ratios up to at least 10 ppbv can be measured with the instrument without significant reagent ion depletion. Besides the possibility to measure compounds like ammonia and amines (dimethylamine), we demonstrate that the ionization scheme is also suitable for the measurement of trace gases containing iodine. During CLOUD experiments to investigate the formation of new particles from I2 , many different iodine-containing species were identified with the water cluster CI-APi-TOF. The compounds included iodic acid and neutral molecular clusters containing up to four iodine atoms. However, the molecular structures of the iodine-containing clusters are ambiguous due to the presence of an unknown number of water molecules. The quantification of iodic acid ( HIO3 ) mixing ratios is performed from an intercomparison with a nitrate CI-APi-TOF. Using this method the detection limit for HIO3 can be estimated as 0.007 pptv. In addition to presenting our measurements obtained at the CLOUD chamber, we discuss the applicability of the water cluster Ci-APi-TOF for atmospheric measurements.

On the strength of hydrogen bonding within water clusters on the coordination limit.

Abstract: Hydrogen bonds (HB) are arguably the most important noncovalent interactions in chemistry. We study herein how differences in connectivity alter the strength of HBs within water clusters of different sizes. We used for this purpose the interacting quantum atoms energy partition, which allows for the quantification of HB formation energies within a molecular cluster. We could expand our previously reported hierarchy of HB strength in these systems (Phys. Chem. Chem. Phys., 2016, 18, 19557) to include tetracoordinated monomers. Surprisingly, the HBs between tetracoordinated water molecules are not the strongest HBs despite the widespread occurrence of these motifs (e.g., in ice Ih ). The strongest HBs within H2 O clusters involve tricoordinated monomers. Nonetheless, HB tetracoordination is preferred in large water clusters because (a) it reduces HB anticooperativity associated with double HB donors and acceptors and (b) it results in a larger number of favorable interactions in the system. Finally, we also discuss (a) the importance of exchange-correlation to discriminate among the different examined types of HBs within H2 O clusters, (b) the use of the above-mentioned scale to quickly assess the relative stability of different isomers of a given water cluster, and (c) how the findings of this research can be exploited to indagate about the formation of polymorphs in crystallography. Overall, we expect that this investigation will provide valuable insights into the subtle interplay of tri- and tetracoordination in HB donors and acceptors as well as the ensuing interaction energies within H2 O clusters.

Observation of the Low-Frequency Spectrum of the Water Dimer as a Sensitive Test of the Water Dimer Potential and Dipole Moment Surfaces.

Abstract: Intermolecular interactions in bulk water are dominated by pairwise and non-pairwise cooperative interactions. While accurate descriptions of the pairwise interactions are available and can be tested by precise low-frequency spectra of the water dimer up to 550 cm-1 , the same does not hold for the three-body interactions. Here, we report the first comprehensive spectrum of the water trimer in the frequency region from 70 to 620 cm-1 using helium-nanodroplet isolation and free-electron lasers. By comparison to accompanying high-level quantum calculations, the experimentally observed intermolecular bands can be assigned. The transition frequencies of the degenerate translation, the degenerate in-plane and the non-degenerate out-of-plane libration, as well as additional bands of the out-of-plane librational mode are reported for the first time. These provide a benchmark for state-of-the-art water potentials and dipole-moment surfaces, especially with respect to three-body interactions.

Importance of self-interaction-error removal in density functional calculations on water cluster anions

Abstract: Accurate description of the excess charge in water cluster anions is challenging for standard semi-local and (global) hybrid density functional approximations (DFAs). Using the recent unitary invariant implementation of the Perdew-Zunger self-interaction correction (SIC) method using Fermi-Lowdin orbitals, we assess the effect of self-interaction error on the vertical detachment energies of water clusters anions with the local spin density approximation (LSDA), Perdew-Burke-Ernzerhof (PBE) generalized gradient approximation, and the strongly constrained and appropriately normed (SCAN) meta-GGA functionals. Our results show that for the relative energies of isomers with respect to reference CCSD(T) values, the uncorrected SCAN functional has the smallest deviation of 21 meV, better than that for the MP2 method. The performance of SIC-SCAN is comparable to that of MP2 and is better than SIC-LSDA and SIC-PBE, but it reverses the ordering of the two lowest isomers for water hexamer anions. Removing self interaction error (SIE) corrects the tendency of LSDA, PBE, and SCAN to over-bind the extra electron. The vertical detachment energies (VDEs) of water cluster anions, obtained from the total energy differences of corresponding anion and neutral clusters, are significantly improved by removing self-interaction and are better than the hybrid B3LYP functional, but fall short of MP2 accuracy. Removing SIE results in substantial improvement in the position of the eigenvalue of the extra electron. The negative of the highest occupied eigenvalue after SIC provides an excellent approximation to the VDE, especially for SIC-PBE where the mean absolute error with respect to CCSD(T) is only 17 meV, the best among all approximations compared in this work.

Deprotonation of Guanine Radical Cation G•+ Mediated by the Protonated Water Cluster.

Abstract: Proton transfer is regarded as a fundamental process in chemical reactions of DNA molecules and continues to be an active research theme due to the connection with charge transport and oxidation da

Phase Equilibrium and Interdiffusion in Poly(Vinyl Methyl Ether)-Water System.

Abstract: The phase state diagram of the poly(vinyl methyl ether)-water system in a wide concentration range was obtained by the optical interferometry method. It was shown that this system was characterized by a complicated phase equilibrium with two lower critical solution temperatures, one of which was located in the concentrated region at 21 °C, and the other one in the region of a dilute solution at 31 °C. In the framework of the Flory-Huggins theory, pair interaction parameters were calculated for different parts of the binodal curves, and an attempt was made to reverse simulate the diagram in different conditions. It was suggested that the unusual character of the diagram was associated with the formation of a complicated complex between PVME and water in the middle region of the compositions. Concentration profiles for different temperatures were constructed. For the first time for this system, the numerical values of the diffusion coefficients of poly(vinyl methyl ether) (PVME) into water and water in PVME were obtained. Concentration and temperature dependences of diffusion coefficients were constructed and analyzed. The kinetics of water sorption in PVME was plotted, the clustering integral was calculated, and the approximate number of molecules in a water cluster was estimated. It was shown that in the dilute solution region upon passing through the binodal curve, the interphase disappeared immediately, and the remaining fluctuation of the concentration decreased in size with time. The kinetics of this process was estimated from the change in the size of such a particle.

Adsorption Behaviors of Different Water Structures on the Fluorapatite (001) Surface: A DFT Study

Abstract: To investigate the effect of hydration behavior on fluorapatite structure, single H2O molecule as well as three layers cluster adsorptions on the fluorapatite (001) surface were performed by means of density functional theory. Results show that single H2O molecule can form stable chemisorption structures with fluorapatite (001) surface in the form of single-site, two-site and three-site adsorption, and the corresponding adsorption energies are 64.817kJ/mol, 98.712 kJ/mol and 139.620 kJ/mol, respectively. Ca2+ can bind with the O of the H2O molecule in the form of ionic interaction, which are mainly contributed by O2p and Ca 3d states, and the interacting length is close to the Ca—O bond in the bulk fluorapatite. Adsorption configuration of three layers of water molecules on fluorapatite (001) surface shows serious hydration reconstruction at the interface, these atoms in the surface layer are highly distorted and the Ca and the PO4 groups are shifted in opposite directions in the z-axis direction.

Mapping the temperature-dependent and network site-specific onset of spectral diffusion at the surface of a water cluster cage

Abstract: We explore the kinetic processes that sustain equilibrium in a microscopic, finite system. This is accomplished by monitoring the spontaneous, time-dependent frequency evolution (the frequency autocorrelation) of a single OH oscillator, embedded in a water cluster held in a temperature-controlled ion trap. The measurements are carried out by applying two-color, infrared-infrared photodissociation mass spectrometry to the D3O+·(HDO)(D2O)19 isotopologue of the “magic number” protonated water cluster, H+·(H2O)21. The OH group can occupy any one of the five spectroscopically distinct sites in the distorted pentagonal dodecahedron cage structure. The OH frequency is observed to evolve over tens of milliseconds in the temperature range (90 to 120 K). Starting at 100 K, large “jumps” are observed between two OH frequencies separated by ∼300 cm−1, indicating migration of the OH group from the bound OH site at 3,350 cm−1 to the free position at 3,686 cm−1. Increasing the temperature to 110 K leads to partial interconversion among many sites. All sites are observed to interconvert at 120 K such that the distribution of the unique OH group among them adopts the form one would expect for a canonical ensemble. The spectral dynamics displayed by the clusters thus offer an unprecedented view into the molecular-level processes that drive spectral diffusion in an extended network of water molecules.

In situ molecular imaging of adsorbed protein films in water indicating hydrophobicity and hydrophilicity.

Abstract: In situ molecular imaging of protein films adsorbed on a solid surface in water was realized by using a vacuum compatible microfluidic interface and time-of-flight secondary ion mass spectrometry (ToF-SIMS). Amino acid fragments from such hydrated protein films are observed and identified in the positive ion mode and the results are in agreement with reported works on dry protein films. Moreover, water clusters from the hydrated protein films have been observed and identified in both the positive and negative ion mode for a series protein films. Thus, the detailed composition of amino acids and water molecules in the hydrated protein films can be characterized, and the protein water microstructures can be revealed by the distinct three-dimensional spatial distribution reconstructed from in situ liquid ToF-SIMS molecular imaging. Furthermore, spectral principal component analysis of amino acid fragment peaks and water cluster peaks provides unique insights into the water cluster distribution, hydrophilicity, and hydrophobicity of hydrated adsorbed protein films in water.

Tracing Local Nanostructure of the Aqueous Solutions of the Biocompatible [Cho][Gly] Ionic Liquid: Importance of Hydrogen Bond Attraction between Like-Charged Ions.

Abstract: The neat and aqueous solutions of the cholinium glycinate ionic liquid (IL), [Cho][Gly], at different water mole fractions, xws, are studied by molecular dynamics simulations. The changes in the local nanostructure of systems with composition have been determined by calculation of various structural distribution functions. Hydrogen bond (H-bond) attractions determine the major relative orientations of the oppositely and like charged nearest neighbors. The cation-anion H-bonds mainly form between the hydrogen of the hydroxyl or methyl groups of the cation and the carboxylate oxygen of the anion. A preferred (antiparallel) arrangement between adjacent [Cho]+ cations is due to the effective H-bond between the hydroxyl oxygen and the methyl hydrogen sites that promotes the like-charge cluster formation. Adding water decreases the occurrence probability of the [Cho]+···[Gly]-···[Cho]+ bridge structure in the aqueous solutions due to the formation of the [Gly]-···HOH···[Gly]- structure via H-bonding. Observed density trend versus xw is interpreted based on an interstice model and investigating the water cluster size distribution. Finally, the effect of xw on the infrared (IR) vibrational spectra were studied and blue and red shifts were observed for the stretching and bending vibrational modes of the hydroxyl group of [Cho]+, respectively. Current findings will improve the efficient engineering design and task-specific applications of aqueous solutions of bio-ILs consist of [Cho]+ and amino acid anions.

Effect of nano-confinement on the structure and properties of water clusters: An ab initio study

Abstract: An ab initio investigation on water clusters confined to armchair carbon nanotubes (CNT) with varying diameters has been performed using the density functional theory-based calculations. Different parameters have been investigated including structure, hydrogen bonding pattern and vibrational spectra of water-CNT complexes. Our results reveal that one-dimensional water chain parallel to CNT axis is formed in narrow nanotubes CNT(4,4) and CNT(5,5), whereas in CNT(6,6), zigzag structure is observed. An increase in the CNT diameter results in more symmetric structures similar to the gas phase. The vibrational analysis shows a redshift in stretching frequency of the hydrogen bond assisted O–H in CNT(6,6) due to the reduction in O—O separation whereas a significant blue shift in stretching frequency mode is observed in highly confined CNT(4,4) and CNT(5,5). It implies that the hydrogen bond strength between water molecules is strongest in CNT(6,6). It is also observed that water cluster tends to be near CNT wall due to H···π interaction between water molecule and the π-electron cloud of CNT. An inverse relation between the electronic charge transfer (from CNT to water) and the diameter is also established. This study demonstrates that the degree of confinement is extremely important in deciding the properties of confined water molecules. The structure and hydrogen bonding properties of the water clusters under nano-confined regime is investigated and the results reveal that the intramolecular charge separation for each water molecule increases under confinement and irrespective of the number of water molecules, the highest tube-water interaction energy is achieved in CNT(5,5) (diameter~7 A). The important finding is that the degree of confinement (diameter of carbon nanotube) is extremely important in deciding the properties of confined water molecules.

Isolating the Contributions of Specific Network Sites to the Diffuse Vibrational Spectrum of Interfacial Water with Isotopomer-Selective Spectroscopy of Cold Clusters.

Abstract: Decoding the structural information contained in the interfacial vibrational spectrum of water requires understanding how the spectral signatures of individual water molecules respond to their local hydrogen bonding environments. In this study, we isolated the contributions for the five classes of sites that differ according to the number of donor (D) and acceptor (A) hydrogen bonds that characterize each site. These patterns were measured by exploiting the unique properties of the water cluster cage structures formed in the gas phase upon hydration of a series of cations M+·(H2O)n (M = Li, Na, Cs, NH4, CH3NH3, H3O, and n = 5, 20-22). This selection of ions was chosen to systematically express the A, AD, AAD, ADD, and AADD hydrogen bonding motifs. The spectral signatures of each site were measured using two-color, IR-IR isotopomer-selective photofragmentation vibrational spectroscopy of the cryogenically cooled, mass selected cluster ions in which a single intact H2O is introduced without isotopic scrambling, an important advantage afforded by the cluster regime. The resulting patterns provide an unprecedented picture of the intrinsic line shapes and spectral complexities associated with excitation of the individual OH groups, as well as the correlation between the frequencies of the two OH groups on the same water molecule, as a function of network site. The properties of the surrounding water network that govern this frequency map are evaluated by dissecting electronic structure calculations that explore how changes in the nearby network structures, both within and beyond the first hydration shell, affect the local frequency of an OH oscillator. The qualitative trends are recovered with a simple model that correlates the OH frequency with the network-modulated local electron density in the center of the OH bond.

An assessment of water placement algorithms in quantum mechanics/molecular mechanics modeling: the case of rhodopsins’ first spectral absorption band maxima

Abstract: Quantum mechanics/molecular mechanics (QM/MM) models are a widely used tool to obtain detailed insight into the properties and functioning of proteins. The outcome of QM/MM studies heavily depends on the quality of the applied QM/MM model. Prediction and right placement of internal water molecules in protein cavities is one of the critical parts of any QM/MM model construction. Herein, we performed a systematic study of four protein hydration algorithms. We tested these algorithms for their ability to predict X-ray-resolved water molecules for a set of membrane photosensitive rhodopsin proteins, as well as the influence of the applied water placement algorithms on the QM/MM calculated absorption maxima (λmax) of these proteins. We used 49 rhodopsins and their intermediates with available X-ray structures as the test set. We found that a proper choice of hydration algorithms and setups is needed to predict functionally important water molecules in the chromophore-binding cavity of rhodopsins, such as the water cluster in the N–H region of bacteriorhodopsin or two water molecules in the binding pocket of bovine visual rhodopsin. The QM/MM calculated λmax of rhodopsins is also quite sensitive to the applied protein hydration protocols. The best methodology allows obtaining an 18.0 nm average value for the absolute deviation of the calculated λmax from the experimental λmax. Although the major effect of water molecules on λmax originates from the water molecules located in the binding pocket, the water molecules outside the binding pocket also affect the calculated λmax mainly by causing a reorganization of the protein structure. The results reported in this study can be used for the evaluation and further development of hydration methodologies, in general, and rhodopsin QM/MM models, in particular.

Dissipative particle dynamics modeling of polyelectrolyte membrane-water interfaces

Abstract: Previous experiments of water vapor penetration into polyelectrolyte membrane (PEM) thin films have indicated the influence of the water concentration gradient and polymer chemistry on the interface evolution, which will eventually affect the efficiency of the fuel cell operation. Moreover, PEMs of different side chains have shown differences in water cluster structure and diffusion. The evolution of the interface between water and polyelectrolyte membranes (PEMs), which are used in fuel cells and flow batteries, of three different side-chain lengths has been studied using dissipative particle dynamics (DPD) simulations. Higher and faster water uptake is usually beneficial in the operation of fuel cells and flow batteries. The simulated water uptake increased with the increasing side chain length. In addition, the water uptake was rapid initially and slowed down afterwards, which is in agreement with the experimental observations. The water cluster formation rate was also found to increase with the increasing side-chain length, whereas the water cluster shapes were unaffected. Water diffusion in the membranes, which affects proton mobility in the PEMs, increased with the side-chain length at all distances from the interface. In conclusion, side-chain length was found to have a strong influence on the interface water structure and water penetration rates, which can be harnessed for the better design of PEMs. Since the PEM can undergo cycles of dehydration and rehydration, faster water uptake increases the efficiency of these devices. We show that the longer side chains with backbone structure similar to Nafion should be more suitable for fuel cell/flow battery usage.

pH-Dependent Water Clusters in Photoacid Solution: Real-Time Observation by ToF-SIMS at a Submicropore Confined Liquid-Vacuum Interface

Abstract: Water clusters are ubiquitously formed in aqueous solutions by hydrogen bonding, which is quite sensitive to various environment factors such as temperature, pressure, electrolytes, and pH. Investigation of how the environment has impact on water structure is important for further understanding of the nature of water and the interactions between water and solutes. In this work, pH-dependent water structure changes were studied by monitoring the changes for the size distribution of protonated water clusters by in-situ liquid ToF-SIMS. In combination with a light illumination system, in-situ liquid ToF-SIMS was used to real-time measure the changes of a light-activated organic photoacid under different light illumination conditions. Thus, the proton transfer and pH-mediated water cluster changes were analyzed in real-time. It was found that higher concentration of free protons could lead to a strengthened local hydrogen bonding network as well as relatively larger protonated water clusters in both organic acid and inorganic acid. Besides, the accumulation of protons at the liquid-vacuum interface under light illumination was observed owing to the affinity of organic molecules to the low-pressure gas phase. The application of in-situ liquid ToF-SIMS analysis in combination with in-situ light illumination system opened up an avenue to real-time investigate light-activated reactions. Besides, the results regarding water structure changes in acidic solutions showed important insights in related atmospheric and physiochemical processes.

Molecular Dynamics Insights into the Nanoscale Structural Organization and Local Interaction of Aqueous Solutions of Ionic Liquid 1-Butyl-3-methylimidazolium Nitrate.

Abstract: Considering the growing number of applications of the aqueous ionic liquids (ILs), atomistic molecular dynamics (MD) simulations were used to probe the effect of water molar fraction, xw, ranging from 0.00 to 0.90, on the nanoscale local structure of 1-butyl-3-methylimidazolium nitrate, [bmim][NO3], IL. The results prove that, with water addition, the cation-anion, cation-cation, and anion-anion structural correlations are weakened, while strong anion-water and unconventional cation-water hydrogen bonds are formed in the solutions. Water molecules were detected as bridges between nitrate anions, and the water cluster size distribution at different xw's was investigated. Simulation shows a similar pattern of probability densities for water and anion around the acidic hydrogen atoms of the reference cation ring, while both species move away from the cation butyl chain. Increasing the water concentration to xw = 0.90 causes decreasing of the local arrangement of the nearest-neighboring cations, because of the weakening of cation-cation π-π stacking. In addition, this dilution reduces the probability of the in-plane cation-anion conformation, disrupts both the polar ionic network and nonpolar domains, and diminishes the nanoaggregation of the cation butyl chains compared to those of the neat IL. These results can rationalize the origins of the fluidity enhancements and transport property trends upon adding water to the imidazolium-based ILs. The current study proposes a deep atomistic-level insight into the complex coupling between water concentration, microscopic structure, and local interactions of aqueous imidazolium-based ILs with hydrophilic anions.

Oxygen K-shell spectroscopy of isolated progressively solvated peptide.

Abstract: Gas-phase near-edge X-ray-absorption fine structure (NEXAFS) action spectroscopy around the oxygen K-edge and mass spectrometry were employed to probe isolated substance P (SP) molecular ions, both bare and progressively solvated with 4 and 11 water molecules. Detailed mass spectra of bare and hydrated precursors are presented for the resonant photon energy of 532 eV that corresponds to O1s → π(amide)* core excitation, triggering resonant Auger decay and fragmentation from the ionized radical molecular system. The fragmentation pattern of doubly protonated SP hydrated with 4 water molecules clearly shows a series of abundant doubly charged backbone fragments, as well as triply charged precursor with small neutral losses, all preserving full water cluster. This is drastically different from the collisional induced dissociation of the hydrated peptide where the water loss is a dominant relaxation process. Moreover, the action NEXAFS obtained from several resolved small backbone fragments revealed increased fragmentation of hydrated SP relative to the bare one, due to a resonant O1s excitation of the attached water molecules. Such unexpected result inspires further experimental developments to investigate possible nonlocal energy transfer from the solvent to the biomolecules within the first solvation shell. The experiment is supported by molecular dynamics and DFT calculations to estimate the intensity of the resonant X-ray absorption of bare and hydrated SP around peptide and water O1s excitation region.

Electronic excited states of benzene in interaction with water clusters : influence of structure and size

Abstract: This work is dedicated to the theoretical investigation of the influence of water clusters' organisation and size on the electronic spectrum of an interacting benzene (Bz) molecule using both TD-DFT and CASPT2 approaches. Two series of geometries, namely $Geo_{IEI}$ and $Geo_{IED}$ were extracted from two Bz-hexagonal ice configurations leading to maximum and minimum ionization energies respectively. An appropriate basis set containing atomic diffuse and polarisation orbitals and describing the Rydberg states of Bz was determined. The TD-DFT approach was carefully benchmarked against CASPT2 results for the smallest systems.Despite some discrepancies, the trends were found to be similar at both levels of theory: the positions and intensities of the main $\pi \rightarrow \pi^{\star}$ transitions were found slightly split due to symmetry breaking. For the smallest systems, our results clearly show the dependence of the electronic transitions on the clusters' structures. Of particular interest, low energy transitions of non negligible oscillator strength from a Bz $\pi$ orbital to a virtual orbital of Rydberg character, also involving atomic diffuse functions and partially expanded on the water cluster, were found for the $Geo_{IED}$ series. The energies of such transitions were determined to be more than 2\,eV below the ionization potential of Bz. When the cluster's size increases, similar transitions were found for all structures, the virtual orbitals becoming mainly developed on the H atoms of the water molecules at the edge of the cluster. Given their nature and energy, such transitions could play a role in the photochemistry of aromatic species in interaction with water clusters or ice, such processes being of astrophysical interest.

Structures and vertical detachment energies of water cluster anions (H2O)n− with n = 6–11

Abstract: The structures and vertical detachment energies (VDEs) of water cluster anions (H2O)− with n = 6–11 are examined by an unbiased global search algorithm, namely comprehensive genetic algorithm (CGA) combined with density functional theory. Benchmark evaluation shows that the B3LYP-D3/6-31(+,3+)G* level of theory could give comparable accuracy of MP2/6-31(+,3 +)G* about the geometric property of water cluster anions. Meanwhile, the energies simulated at the MP2/6-31(+,3 +)G* level of theory converge to the results of CCSD(T)/6-31(+,3 +)G* level. Therefore, the relative energies and VDE of water cluster anions are calculated at the MP2/6-31(+,3 +)G*//B3LYP-D3/6-31(+,3 +)G* level of theory. The structures of (H2O)6–11− clusters obtained from CGA represent that the excess electron destroys the hydrogen bond network and forms an electron hole in most structures. The water cluster anions prefer to form three-membered rings and four-membered rings. As the cluster size increases, the VDE of the water cluster anions increases because the excess electron becomes less diffuse in the larger-sized clusters. Our work gives a comprehensive study about the excess electron disturbing the small-sized neutral water clusters.