A
Anne Salonen
Researcher at University of Helsinki
Publications - 127
Citations - 8340
Anne Salonen is an academic researcher from University of Helsinki. The author has contributed to research in topics: Gut flora & Medicine. The author has an hindex of 39, co-authored 96 publications receiving 6375 citations. Previous affiliations of Anne Salonen include University of Tampere & National Institutes of Health.
Papers
More filters
Journal ArticleDOI
Towards standards for human fecal sample processing in metagenomic studies
Paul I. Costea,Georg Zeller,Shinichi Sunagawa,Eric Pelletier,Eric Pelletier,Adriana Alberti,Florence Levenez,Melanie Tramontano,Marja Driessen,Rajna Hercog,Ferris Elias Jung,Jens Roat Kultima,Matthew R. Hayward,Luis Pedro Coelho,Emma Allen-Vercoe,Laurie Bertrand,Michael Blaut,Jillian R.M. Brown,Thomas Carton,Stéphanie Cools-Portier,Michelle C. Daigneault,Muriel Derrien,Anne Druesne,Willem M. de Vos,Willem M. de Vos,B. Brett Finlay,Harry J. Flint,Francisco Guarner,Masahira Hattori,Masahira Hattori,Hans G.H.J. Heilig,Ruth Ann Luna,Johan E. T. van Hylckama Vlieg,Jana Junick,Ingeborg Klymiuk,Philippe Langella,Volker Mai,Chaysavanh Manichanh,Jennifer C. Martin,Clémentine Mery,Hidetoshi Morita,Paul W. O'Toole,Céline Orvain,Kiran Raosaheb Patil,John Penders,Søren Persson,Nicolas Pons,Milena Popova,Anne Salonen,Delphine M. Saulnier,Karen P. Scott,Bhagirath Singh,Kathleen Slezak,Patrick Veiga,James Versalovic,Liping Zhao,Erwin G. Zoetendal,S. Dusko Ehrlich,S. Dusko Ehrlich,Joël Doré,Peer Bork +60 more
TL;DR: A standardized DNA extraction method for human fecal samples is recommended, for which transferability across labs was established and which was further benchmarked using a mock community of known composition to improve comparability of human gut microbiome studies and facilitate meta-analyses.
Journal ArticleDOI
Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis
Anne Salonen,Janne Nikkilä,Jonna Jalanka-Tuovinen,Outi Immonen,Mirjana Rajilić-Stojanović,Riina A. Kekkonen,Airi Palva,Willem M. de Vos,Willem M. de Vos +8 more
TL;DR: A detailed comparative analysis of mechanical and enzymatic methods showed that despite their overall similarity, the mechanical cell disruption by repeated bead beating showed the highest bacterial diversity and resulted in significantly improved DNA extraction efficiency of archaea and some bacteria, including Clostridium cluster IV.
Journal ArticleDOI
Intestinal microbiome is related to lifetime antibiotic use in Finnish pre-school children
Katri Korpela,Anne Salonen,Lauri J. Virta,Riina A. Kekkonen,Kristoffer Forslund,Peer Bork,Willem M. de Vos,Willem M. de Vos +7 more
TL;DR: The results support the idea that the impact on the intestinal microbiota should be considered when prescribing antibiotics, and show that macrolide use in 2–7 year-old Finnish children is associated with a long-lasting shift in microbiota composition and metabolism.
Journal ArticleDOI
Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men
Anne Salonen,Leo Lahti,Jarkko Salojärvi,Grietje Holtrop,Katri Korpela,Sylvia H. Duncan,Priya Date,Freda M. Farquharson,Alexandra M. Johnstone,Gerald E. Lobley,Petra Louis,Harry J. Flint,Willem M. de Vos +12 more
TL;DR: The dietary responsiveness of the individual’s microbiota varied substantially and associated inversely with its diversity, suggesting that individuals can be stratified into responders and non-responders based on the features of their intestinal microbiota.
Book ChapterDOI
Viral RNA replication in association with cellular membranes.
TL;DR: All plus-strand RNA viruses replicate in association with cytoplasmic membranes of infected cells, and studies of individual nonstructural proteins have revealed that the replication complexes are associated with the membranes and targeted to the respective organelle by the ns proteins rather than RNA.