G
Gerry Bouffard
Researcher at National Institutes of Health
Publications - 10
Citations - 4444
Gerry Bouffard is an academic researcher from National Institutes of Health. The author has contributed to research in topics: Gene & Genome. The author has an hindex of 10, co-authored 10 publications receiving 4014 citations.
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Journal ArticleDOI
The ENCODE (ENCyclopedia of DNA elements) Project
Elise A. Feingold,Peter J. Good,Mark S. Guyer,S. Kamholz,L. Liefer,Kris A. Wetterstrand,Francis S. Collins,Thomas R. Gingeras,Dione Kampa,E. A. Sekinger,Jill Cheng,H. Hirsch,Srinka Ghosh,Zhou Zhu,Sandeep Patel,Antonio Piccolboni,A. Yang,Hari Tammana,Stefan Bekiranov,Philipp Kapranov,Rhonda Harrison,George M. Church,Kevin Struhl,Bing Ren,Tae Hoon Kim,Leah O. Barrera,Chunxu Qu,S. van Calcar,R. Luna,C. K. Glass,M. G. Rosenfeld,Roderic Guigó,Stylianos E. Antonarakis,Ewan Birney,Michael R. Brent,Lior Pachter,Alexandre Reymond,Emmanouil T. Dermitzakis,Colin N. Dewey,Damian Keefe,F. Denoeud,Julien Lagarde,Jennifer L. Ashurst,Tim Hubbard,Jan-Jaap Wesselink,Robert Castelo,Eduardo Eyras,Richard M. Myers,Arend Sidow,Serafim Batzoglou,Nathan D. Trinklein,Sara J. Hartman,Shelley Force Aldred,Elizabeth Anton,Diane I. Schroeder,S. S. Marticke,Long H. Nguyen,Jeremy Schmutz,Jane Grimwood,Mark Dickson,Gregory M. Cooper,Eric A. Stone,George Asimenos,Michael Brudno,Anindya Dutta,Neerja Karnani,Christopher M. Taylor,H. K. Kim,Gabriel Robins,George Stamatoyannopoulos,John A. Stamatoyannopoulos,Michael O. Dorschner,Peter J. Sabo,Michael Hawrylycz,Richard Humbert,James C. Wallace,Min-Feng Yu,Patrick A. Navas,M. McArthur,William Stafford Noble,Ian Dunham,Christof Koch,Robert M. Andrews,Gayle K. Clelland,Sarah Wilcox,Joanna C. Fowler,Keith D. James,P. Groth,Oliver M. Dovey,Peter D. Ellis,Vicki L. Wraight,Andrew J. Mungall,Pawandeep Dhami,Heike Fiegler,Cordelia Langford,Nigel P. Carter,David Vetrie,Michael Snyder,Ghia Euskirchen,Alexander E. Urban,Ugrappa Nagalakshmi,John L. Rinn,George V. Popescu,Paul Bertone,Stephen Hartman,Joel Rozowsky,Olof Emanuelsson,Thomas Royce,Sambath Chung,Mark Gerstein,Zheng Lian,Jane B. Lian,Y. Nakayama,Sherman M. Weissman,Viktor Stolc,W. Tongprasit,H. Sethi,Steven J.M. Jones,Marco A. Marra,H. Shin,Jacquie Schein,Michele Clamp,Kerstin Lindblad-Toh,Jean L. Chang,David B. Jaffe,Michael Kamal,Eric S. Lander,Tarjei S. Mikkelsen,Jade P. Vinson,Michael C. Zody,P. J. De Jong,Kazutoyo Osoegawa,Mikhail Nefedov,Baoli Zhu,Andreas D. Baxevanis,Tyra G. Wolfsberg,Gregory E. Crawford,James R R Whittle,Ingeborg Holt,T. J. Vasicek,D. Zhou,Shu-Jin Luo,Eric D. Green,Gerry Bouffard,Elliott H. Margulies,Matthew E. Portnoy,Nancy F. Hansen,Pamela J. Thomas,Jenny McDowell,Baishali Maskeri,Alice C. Young,Jacquelyn R. Idol,Robert W. Blakesley,Greg Schuler,Webb Miller,Ross C. Hardison,Laura Elnitski,Prachi Shah,Steven L. Salzberg,Mihaela Pertea,William H. Majoros,David Haussler,Daryl J. Thomas,Kate R. Rosenbloom,Hiram Clawson,Adam Siepel,W. J. Kent,Zhiping Weng,S. Jin,Anason S. Halees,H. Burden,Ulas Karaoz,Yutao Fu,Yong Yu,C. Ding,Charles R. Cantor,Robert E. Kingston,Jonathan H. Dennis,Roland Green,Michael A. Singer,Todd Richmond,J. E. Norton,Peggy J. Farnham,Matthew J. Oberley,D. R. Inman,M. R. McCormick,H. Kim,C. L. Middle,Michael C. Pirrung,Xiang-Dong Fu,Y. S. Kwon,Z. Ye,Job Dekker,Tomoko M. Tabuchi,Nele Gheldof,Josée Dostie,S. C. Harvey +196 more
TL;DR: The ENCyclopedia Of DNA Elements (ENCODE) Project is organized as an international consortium of computational and laboratory-based scientists working to develop and apply high-throughput approaches for detecting all sequence elements that confer biological function.
Journal ArticleDOI
Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants
Stephen C. J. Parker,Michael L. Stitzel,D. Leland Taylor,Jose M. Orozco,Michael R. Erdos,Jennifer A. Akiyama,Kelly Lammerts van Bueren,Peter S. Chines,Narisu Narisu,Nisc Comparative Sequencing Program,Brian L. Black,Axel Visel,Axel Visel,Len A. Pennacchio,Len A. Pennacchio,Francis S. Collins,Jesse Becker,Betty Benjamin,Robert W. Blakesley,Gerry Bouffard,Shelise Brooks,Holly Coleman,Mila Dekhtyar,Michael D. Gregory,Xiaobin Guan,Jyoti Gupta,Joel Han,April Hargrove,Shi-ling Ho,Taccara Johnson,Richelle Legaspi,Sean Lovett,Quino Maduro,Cathy Masiello,Baishali Maskeri,Jenny McDowell,Casandra Montemayor,James C. Mullikin,Morgan Park,Nancy Riebow,Karen Schandler,Brian L. Schmidt,Christina Sison,Mal Stantripop,James Thomas,Pam Thomas,Meg Vemulapalli,Alice Young +47 more
TL;DR: In this article, the authors performed systematic chromatin and transcriptome profiling in human pancreatic islets and found that stretch enhancers are critical chromatin elements for coordinating cell type-specific regulatory programs.
Journal ArticleDOI
Comparative analyses of multi-species sequences from targeted genomic regions
James W. Thomas,James W. Thomas,Jeffrey W. Touchman,Robert W. Blakesley,Gerry Bouffard,Stephen M. Beckstrom-Sternberg,Elliott H. Margulies,Mathieu Blanchette,Adam Siepel,Pamela J. Thomas,Jenny McDowell,Baishali Maskeri,Nancy F. Hansen,M. S. Schwartz,R. J. Weber,W. J. Kent,Donna Karolchik,T. C. Bruen,R. Bevan,David J. Cutler,Scott Schwartz,Laura Elnitski,Jacquelyn R. Idol,Arjun B. Prasad,Shih-Queen Lee-Lin,Valerie Maduro,Tyrone J. Summers,Matthew E. Portnoy,Nicole Dietrich,N. Akhter,K. Ayele,Betty Benjamin,K. Cariaga,Charles P. Brinkley,Shelise Brooks,S. Granite,Xin-Yuan Guan,Jyoti Gupta,P. Haghighi,S. L. Ho,M. C. Huang,Eric Karlins,P. L. Laric,Richelle Legaspi,M. J. Lim,Quino Maduro,Cathy Masiello,Stephen D. Mastrian,J. C. McCloskey,R. Pearson,Sirintorn Stantripop,Emmanuelle Tiongson,J. T. Tran,C. Tsurgeon,Jennifer Vogt,M. A. Walker,Keith Wetherby,L. S. Wiggins,Alice C. Young,L. H. Zhang,Kazutoyo Osoegawa,Baoli Zhu,B. Zhao,C. L. Shu,P. J. De Jong,Charles E. Lawrence,Arian F.A. Smit,Aravinda Chakravarti,David Haussler,Philip Green,Webb Miller,Eric D. Green +71 more
TL;DR: The generation and analysis of over 12 megabases of sequence from 12 species, all derived from the genomic region orthologous to a segment of about 1.8 Mb on human chromosome 7 containing ten genes, show conservation reflecting both functional constraints and the neutral mutational events that shaped this genomic region.
Journal ArticleDOI
Maturation and Diversity of the VRC01-Antibody Lineage over 15 Years of Chronic HIV-1 Infection.
Xueling Wu,Xueling Wu,Zhenhai Zhang,Chaim A. Schramm,M. Gordon Joyce,Young Do Kwon,Tongqing Zhou,Zizhang Sheng,Baoshan Zhang,Sijy O'Dell,Krisha McKee,Ivelin S. Georgiev,Gwo-Yu Chuang,Nancy S. Longo,Rebecca M. Lynch,Kevin O. Saunders,Cinque Soto,Sanjay Srivatsan,Yongping Yang,Robert T. Bailer,Mark K. Louder,Betty Benjamin,Robert W. Blakesley,Gerry Bouffard,Shelise Brooks,Holly Coleman,Mila Dekhtyar,Michael D. Gregory,Xiaobin Guan,Jyoti Gupta,Joel Han,April Hargrove,Shi-ling Ho,Richelle Legaspi,Quino Maduro,Cathy Masiello,Baishali Maskeri,Jenny McDowell,Casandra Montemayor,Morgan Park,Nancy Riebow,Karen Schandler,Brian L. Schmidt,Christina Sison,Mal Stantripop,James Thomas,Pam Thomas,Meg Vemulapalli,Alice Young,James C. Mullikin,Mark Connors,Peter D. Kwong,John R. Mascola,Lawrence Shapiro,Lawrence Shapiro +54 more
TL;DR: Over the course of the study period, VRC01-lineage clades showed continuous evolution, with rates of ∼2 substitutions per 100 nucleotides per year, comparable to that of HIV-1 evolution.
Journal ArticleDOI
Genome-wide recombination drives diversification of epidemic strains of Acinetobacter baumannii
Evan S. Snitkin,Adrian M. Zelazny,Clemente I. Montero,Frida Stock,Lilia A. Mijares,Patrick R. Murray,Julie A. Segre,Jim C. Mullikin,Robert W. Blakesley,Alice Young,Grace Chu,Colleen Ramsahoye,Sean Lovett,Joel Han,Richelle Legaspi,Christina Sison,Michael D. Gregory,Casandra Montemayor,Marie Gestole,April Hargrove,Taccara Johnson,Jerlil Myrick,Nancy Riebow,Brian L. Schmidt,Betsy Novotny,Jyoti Gupta,Betty Benjamin,Shelise Brooks,Holly Coleman,Shi-ling Ho,Karen Schandler,Lauren H. Smith,Mal Stantripop,Quino Maduro,Gerry Bouffard,Mila Dekhtyar,Xiaobin Guan,Cathy Masiello,Baishali Maskeri,Jenny McDowell,Morgan Park,Pam Thomas +41 more
TL;DR: A genomic study of a polyclonal outbreak of multidrug-resistant A. baumannii found the simultaneous presence of three divergent strains from this lineage supports its increasing prevalence in international hospitals and suggests an ongoing adaptation to the hospital environment.