H
Han Xu
Researcher at University of Texas MD Anderson Cancer Center
Publications - 78
Citations - 17518
Han Xu is an academic researcher from University of Texas MD Anderson Cancer Center. The author has contributed to research in topics: CRISPR & Cas9. The author has an hindex of 30, co-authored 63 publications receiving 14182 citations. Previous affiliations of Han Xu include Broad Institute & National University of Singapore.
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Journal ArticleDOI
Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
Xi Chen,Han Xu,Ping Yuan,Fang Fang,Fang Fang,Mikael Huss,Vinsensius B. Vega,Eleanor Wong,Yuriy L. Orlov,Weiwei Zhang,Weiwei Zhang,Jianming Jiang,Jianming Jiang,Yuin-Han Loh,Yuin-Han Loh,Hock Chuan Yeo,Zhen Xuan Yeo,Vipin Narang,Kunde R Govindarajan,Bernard Leong,Atif Shahab,Yijun Ruan,Guillaume Bourque,Wing-Kin Sung,Neil D. Clarke,Chia-Lin Wei,Huck-Hui Ng,Huck-Hui Ng +27 more
TL;DR: This study uses chromatin immunoprecipitation coupled with ultra-high-throughput DNA sequencing to map the locations of TF-binding sites and identifies important features of the transcriptional regulatory networks that define ES-cell identity.
Journal ArticleDOI
Partitioning heritability by functional annotation using genome-wide association summary statistics.
Hilary K. Finucane,Hilary K. Finucane,Brendan Bulik-Sullivan,Brendan Bulik-Sullivan,Alexander Gusev,Gosia Trynka,Yakir A. Reshef,Po-Ru Loh,Verneri Anttila,Verneri Anttila,Han Xu,Chongzhi Zang,Kyle Kai-How Farh,Kyle Kai-How Farh,Stephan Ripke,Stephan Ripke,Felix R. Day,Shaun Purcell,Shaun Purcell,Eli A. Stahl,Sara Lindström,John R. B. Perry,Yukinori Okada,Soumya Raychaudhuri,Mark J. Daly,Mark J. Daly,Nick Patterson,Benjamin M. Neale,Benjamin M. Neale,Alkes L. Price,Alkes L. Price +30 more
TL;DR: A new method is introduced, stratified LD score regression, for partitioning heritability from GWAS summary statistics while accounting for linked markers, which is computationally tractable at very large sample sizes and leverages genome-wide information.
Journal ArticleDOI
An oestrogen-receptor-α-bound human chromatin interactome
Melissa J. Fullwood,Mei Hui Liu,You Fu Pan,Jun Liu,Han Xu,Yusoff Bin Mohamed,Yuriy L. Orlov,Stoyan Velkov,Andrea Ho,Poh Huay Mei,Elaine G.Y. Chew,Phillips Yao Hui Huang,Willem Welboren,Yuyuan Han,Hong Sain Ooi,Pramila N. Ariyaratne,Vinsensius B. Vega,Yanquan Luo,Peck Yean Tan,Pei Ye Choy,K. D. Senali Abayratna Wansa,Bing Zhao,Kar Sian Lim,Shi Chi Leow,Jit Sin Yow,Roy Joseph,Haixia Li,Kartiki V. Desai,Jane S. Thomsen,Yew Kok Lee,R. Krishna Murthy Karuturi,Thoreau Herve,Guillaume Bourque,Hendrik G. Stunnenberg,Xiaoan Ruan,Valere Cacheux-Rataboul,Wing-Kin Sung,Wing-Kin Sung,Edison T. Liu,Chia-Lin Wei,Edwin Cheung,Edwin Cheung,Edwin Cheung,Yijun Ruan,Yijun Ruan +44 more
TL;DR: It is proposed that chromatin interactions constitute a primary mechanism for regulating transcription in mammalian genomes and is described as a new strategy, chromatin interaction analysis by paired-end tag sequencing (ChIA-PET) for the de novo detection of global Chromatin interactions.
Journal ArticleDOI
Pigment epithelium-derived factor: a potent inhibitor of angiogenesis.
David W. Dawson,Olga V. Volpert,Paul R. Gillis,Susan E. Crawford,Han Xu,William F. Benedict,Noel P. Bouck +6 more
TL;DR: The results suggest that PEDF may be of therapeutic use, especially in retinopathies where pathological neovascularization compromises vision and leads to blindness.
Journal ArticleDOI
MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens.
Wei Li,Han Xu,Tengfei Xiao,Le Cong,Le Cong,Michael I. Love,Feng Zhang,Feng Zhang,Rafael A. Irizarry,Jun Liu,Myles Brown,Myles Brown,X. Shirley Liu +12 more
TL;DR: Model-based Analysis of Genome-wide CRISPR/Cas9 Knockout (MAGeCK) demonstrates better performance compared with existing methods, identifies both positively and negatively selected genes simultaneously, and reports robust results across different experimental conditions.