H
Hong Gao
Researcher at Illumina
Publications - 24
Citations - 2893
Hong Gao is an academic researcher from Illumina. The author has contributed to research in topics: Population & Medicine. The author has an hindex of 10, co-authored 17 publications receiving 2131 citations. Previous affiliations of Hong Gao include Stanford University & Cornell University.
Papers
More filters
Journal ArticleDOI
Predicting Splicing from Primary Sequence with Deep Learning.
Kishore Jaganathan,Sofia Kyriazopoulou Panagiotopoulou,Jeremy F. McRae,Siavash Fazel Darbandi,David A. Knowles,Yang I. Li,Jack A. Kosmicki,Jack A. Kosmicki,Juan Arbelaez,Wenwu Cui,Grace Schwartz,Eric D. Chow,Efstathios Kanterakis,Hong Gao,Amirali Kia,Serafim Batzoglou,Stephen Sanders,Kyle Kai-How Farh +17 more
TL;DR: A deep neural network is described that accurately predicts splice junctions from an arbitrary pre-mRNA transcript sequence, enabling precise prediction of noncoding genetic variants that cause cryptic splicing.
Journal ArticleDOI
Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds
Richard A. Gibbs,Jeremy F. Taylor,Curtis P. Van Tassell,William Barendse,William Barendse,Kellye Eversole,Clare A. Gill,Ronnie D. Green,Debora L. Hamernik,Steven M. Kappes,Sigbjørn Lien,Lakshmi K. Matukumalli,Lakshmi K. Matukumalli,John C. McEwan,Lynne V. Nazareth,Robert D. Schnabel,George M. Weinstock,David A. Wheeler,Paolo Ajmone-Marsan,Paul Boettcher,Alexandre Rodrigues Caetano,José Fernando Garcia,José Fernando Garcia,Olivier Hanotte,Paola Mariani,Loren C. Skow,Tad S. Sonstegard,John L. Williams,John L. Williams,Boubacar Diallo,Lemecha Hailemariam,Mário Luiz Martinez,C. A. Morris,Luiz Otávio Campos da Silva,Richard J. Spelman,Woudyalew Mulatu,Keyan Zhao,Colette A. Abbey,Morris Agaba,Flábio R. Araújo,Rowan J. Bunch,Rowan J. Bunch,James O. Burton,C. Gorni,Hanotte Olivier,Blair E. Harrison,Blair E. Harrison,Bill Luff,Marco Antonio Machado,Joel Mwakaya,Graham Plastow,Warren Sim,Warren Sim,Timothy P. L. Smith,Merle B Thomas,Merle B Thomas,Alessio Valentini,Paul D. Williams,James E. Womack,John Woolliams,Yue Liu,Xiang Qin,Kim C. Worley,Chuan Gao,Huaiyang Jiang,Stephen S. Moore,Yanru Ren,Xingzhi Song,Carlos Bustamante,Ryan D. Hernandez,Donna M. Muzny,Shobha Patil,Anthony San Lucas,Qing Fu,Matthew Peter Kent,Richard Vega,Aruna Matukumalli,Sean McWilliam,Sean McWilliam,Gert Sclep,Katarzyna Bryc,Jung-Woo Choi,Hong Gao,John J. Grefenstette,Brenda M. Murdoch,Alessandra Stella,Rafael Villa-Angulo,Mark G. Wright,Jan Aerts,Jan Aerts,Oliver C. Jann,Riccardo Negrini,Michael E. Goddard,Michael E. Goddard,Ben J. Hayes,Daniel G. Bradley,Marcos V.B. da Silva,Marcos V.B. da Silva,Lilian P.L. Lau,George E. Liu,David J. Lynn,David J. Lynn,Francesca Panzitta,Ken G. Dodds +103 more
TL;DR: Data show that cattle have undergone a rapid recent decrease in effective population size from a very large ancestral population, possibly due to bottlenecks associated with domestication, selection, and breed formation.
Journal ArticleDOI
A Markov Chain Monte Carlo Approach for Joint Inference of Population Structure and Inbreeding Rates From Multilocus Genotype Data
TL;DR: The popular Bayesian clustering approach STRUCTURES is extended for simultaneous inference of inbreeding or selfing rates and population-of-origin classification using multilocus genetic markers and it is shown that selfing leads to spurious signals of population substructure using the standard STRUCTURE algorithm with a bias toward spurious signal of admixture.
Journal ArticleDOI
Predicting the clinical impact of human mutation with deep neural networks
Laksshman Sundaram,Laksshman Sundaram,Laksshman Sundaram,Hong Gao,Samskruthi Reddy Padigepati,Samskruthi Reddy Padigepati,Jeremy F. McRae,Yanjun Li,Jack A. Kosmicki,Jack A. Kosmicki,Nondas Fritzilas,Jörg Hakenberg,Anindita Dutta,John Shon,Jinbo Xu,Serafim Batzoglou,Xiaolin Li,Kyle Kai-How Farh +17 more
TL;DR: It is demonstrated that common missense variants in other primate species are largely clinically benign in human, enabling pathogenic mutations to be systematically identified by the process of elimination.
Journal ArticleDOI
Research principles for developing country food value chains
Miguel I. Gómez,Christopher B. Barrett,L.E. Buck,H. De Groote,S Ferris,Hong Gao,Ellen B. McCullough,D.D. Miller,Hugh Outhred,Alice N. Pell,Thomas Reardon,Maria Retnanestri,Ruerd Ruben,P. Struebi,Jo Swinnen,M.A Touesnard,Kilian Q. Weinberger,J.D.H. Keatinge,M.B. Milstein,R.Y. Yang +19 more
TL;DR: Five ways are outlined below ways in which scientists must integrate existing disciplinary evidence into rigorous models and must develop measures and methods to evaluate the multidimensional performance of FVCs.