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Shobha Patil
Researcher at Baylor College of Medicine
Publications - 4
Citations - 2397
Shobha Patil is an academic researcher from Baylor College of Medicine. The author has contributed to research in topics: Genome & Population. The author has an hindex of 4, co-authored 4 publications receiving 2282 citations.
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Journal ArticleDOI
Evolutionary and biomedical insights from the rhesus macaque genome
Richard A. Gibbs,Jeffrey Rogers,Michael G. Katze,Roger E. Bumgarner,George M. Weinstock,Elaine R. Mardis,Karin A. Remington,Robert L. Strausberg,J. Craig Venter,Richard K. Wilson,Mark A. Batzer,Carlos Bustamante,Evan E. Eichler,Matthew W. Hahn,Ross C. Hardison,Kateryna D. Makova,Webb Miller,Aleksandar Milosavljevic,Robert E. Palermo,Adam Siepel,James M. Sikela,Tony Attaway,Stephanie Bell,Kelly E. Bernard,Christian J. Buhay,Mimi N. Chandrabose,Marvin Diep Dao,Clay Davis,Kimberly D. Delehaunty,Yan Ding,Huyen Dinh,Shannon Dugan-Rocha,Lucinda Fulton,Ramatu Ayiesha Gabisi,Toni T. Garner,Jennifer Godfrey,Alicia Hawes,Judith Hernandez,Sandra Hines,Michael Holder,Jennifer Hume,Shalini N. Jhangiani,Vandita Joshi,Ziad Khan,Ewen F. Kirkness,Andrew Cree,R. Gerald Fowler,Sandra L. Lee,Lora Lewis,Zhangwan Li,Yih-shin Liu,Stephanie M. Moore,Donna M. Muzny,Lynne V. Nazareth,Dinh Ngoc Ngo,Geoffrey Okwuonu,Grace Pai,David A. Parker,Heidie A. Paul,Cynthia Pfannkoch,Craig Pohl,Yu-Hui Rogers,San Juana Ruiz,Aniko Sabo,Jireh Santibanez,Brian W. Schneider,Scott M. Smith,Erica Sodergren,Amanda F. Svatek,Teresa Utterback,Selina Vattathil,Wesley C. Warren,Courtney Sherell White,Asif T. Chinwalla,Yucheng Feng,Aaron L. Halpern,LaDeana W. Hillier,Xiaoqiu Huang,Patrick Minx,Joanne O. Nelson,Kymberlie H. Pepin,Xiang Qin,Granger G. Sutton,Eli Venter,Brian P. Walenz,John W. Wallis,Kim C. Worley,Shiaw-Pyng Yang,Steven J. M. Jones,Marco A. Marra,Mariano Rocchi,Jacqueline E. Schein,Robert Baertsch,Laura Clarke,Miklós Csürös,Jarret Glasscock,R. Alan Harris,Paul Havlak,Andrew R. Jackson,Huaiyang Jiang,Yue Liu,David N. Messina,Yufeng Shen,Henry Xing-Zhi Song,Todd Wylie,Lan Zhang,Ewan Birney,Kyudong Han,Miriam K. Konkel,Jungnam Lee,Arian F.A. Smit,Brygg Ullmer,Hui Wang,Jinchuan Xing,Jinchuan Xing,Richard Burhans,Ze Cheng,John E. Karro,Jian Ma,Brian J. Raney,Xinwei She,Michael J. Cox,Jeffery P. Demuth,Laura J. Dumas,Sang-Gook Han,Janet A. Hopkins,Anis Karimpour-Fard,Young Ho Kim,Jonathan R. Pollack,Tomas Vinar,Charles Addo-Quaye,Jeremiah D. Degenhardt,Alexandra Denby,Melissa J. Hubisz,Amit Indap,Carolin Kosiol,Bruce T. Lahn,Heather A. Lawson,Alison Marklein,Rasmus Nielsen,Eric J. Vallender,Andrew G. Clark,Betsy Ferguson,Ryan D. Hernandez,Kashif Hirani,Hildegard Kehrer-Sawatzki,Jessica Kolb,Shobha Patil,Ling-Ling Pu,Yanru Ren,David Glenn Smith,David A. Wheeler,Ian Schenck,Edward V. Ball,Rui Chen,David Neil Cooper,Belinda Giardine,Fan Hsu,W. James Kent,Arthur M. Lesk,David L. Nelson,William E. O'Brien,Kay Prüfer,Peter D. Stenson,James C. Wallace,Hui Ke,Xiaoming Liu,Peng Wang,Andy Peng Xiang,Fan Yang,Galt P. Barber,David Haussler,David Haussler,Donna Karolchik,Andrew D. Kern,Robert M. Kuhn,Kayla E. Smith,Ann S. Zwieg +177 more
TL;DR: The genome sequence of an Indian-origin Macaca mulatta female is determined and compared with chimpanzees and humans to reveal the structure of ancestral primate genomes and to identify evidence for positive selection and lineage-specific expansions and contractions of gene families.
Journal ArticleDOI
Genome-Wide Survey of SNP Variation Uncovers the Genetic Structure of Cattle Breeds
Richard A. Gibbs,Jeremy F. Taylor,Curtis P. Van Tassell,William Barendse,William Barendse,Kellye Eversole,Clare A. Gill,Ronnie D. Green,Debora L. Hamernik,Steven M. Kappes,Sigbjørn Lien,Lakshmi K. Matukumalli,Lakshmi K. Matukumalli,John C. McEwan,Lynne V. Nazareth,Robert D. Schnabel,George M. Weinstock,David A. Wheeler,Paolo Ajmone-Marsan,Paul Boettcher,Alexandre Rodrigues Caetano,José Fernando Garcia,José Fernando Garcia,Olivier Hanotte,Paola Mariani,Loren C. Skow,Tad S. Sonstegard,John L. Williams,John L. Williams,Boubacar Diallo,Lemecha Hailemariam,Mário Luiz Martinez,C. A. Morris,Luiz Otávio Campos da Silva,Richard J. Spelman,Woudyalew Mulatu,Keyan Zhao,Colette A. Abbey,Morris Agaba,Flábio R. Araújo,Rowan J. Bunch,Rowan J. Bunch,James O. Burton,C. Gorni,Hanotte Olivier,Blair E. Harrison,Blair E. Harrison,Bill Luff,Marco Antonio Machado,Joel Mwakaya,Graham Plastow,Warren Sim,Warren Sim,Timothy P. L. Smith,Merle B Thomas,Merle B Thomas,Alessio Valentini,Paul D. Williams,James E. Womack,John Woolliams,Yue Liu,Xiang Qin,Kim C. Worley,Chuan Gao,Huaiyang Jiang,Stephen S. Moore,Yanru Ren,Xingzhi Song,Carlos Bustamante,Ryan D. Hernandez,Donna M. Muzny,Shobha Patil,Anthony San Lucas,Qing Fu,Matthew Peter Kent,Richard Vega,Aruna Matukumalli,Sean McWilliam,Sean McWilliam,Gert Sclep,Katarzyna Bryc,Jung-Woo Choi,Hong Gao,John J. Grefenstette,Brenda M. Murdoch,Alessandra Stella,Rafael Villa-Angulo,Mark G. Wright,Jan Aerts,Jan Aerts,Oliver C. Jann,Riccardo Negrini,Michael E. Goddard,Michael E. Goddard,Ben J. Hayes,Daniel G. Bradley,Marcos V.B. da Silva,Marcos V.B. da Silva,Lilian P.L. Lau,George E. Liu,David J. Lynn,David J. Lynn,Francesca Panzitta,Ken G. Dodds +103 more
TL;DR: Data show that cattle have undergone a rapid recent decrease in effective population size from a very large ancestral population, possibly due to bottlenecks associated with domestication, selection, and breed formation.
Journal ArticleDOI
The first myriapod genome sequence reveals conservative arthropod gene content and genome organisation in the centipede Strigamia maritima
Ariel D. Chipman,David E. K. Ferrier,Carlo Brena,Jiaxin Qu,Daniel S.T. Hughes,Reinhard Schröder,Montserrat Torres-Oliva,Nadia Znassi,Huaiyang Jiang,Francisca C. Almeida,Francisca C. Almeida,Claudio R. Alonso,Zivkos Apostolou,Zivkos Apostolou,Peshtewani K. Aqrawi,Wallace Arthur,Jennifer C. J. Barna,Kerstin P. Blankenburg,Daniela Brites,Daniela Brites,Salvador Capella-Gutierrez,Marcus Coyle,Peter K. Dearden,Louis Du Pasquier,Elizabeth J. Duncan,Dieter Ebert,Cornelius Eibner,Galina Erikson,Galina Erikson,Peter D. Evans,Cassandra G. Extavour,Liezl Francisco,Toni Gabaldón,Toni Gabaldón,William J. Gillis,Elizabeth A. Goodwin-Horn,Jack E. Green,Sam Griffiths-Jones,Cornelis J. P. Grimmelikhuijzen,Sai Gubbala,Roderic Guigó,Yi Han,Frank Hauser,Paul Havlak,Luke Hayden,Sophie Helbing,Michael Holder,Jerome H.L. Hui,Julia P. Hunn,Vera S. Hunnekuhl,LaRonda Jackson,Mehwish Javaid,Shalini N. Jhangiani,Francis M. Jiggins,Tamsin E. M. Jones,Tobias S. Kaiser,Divya Kalra,Nathan J. Kenny,Viktoriya Korchina,Christie Kovar,F. Bernhard Kraus,François Lapraz,Sandra L. Lee,Jie Lv,Christigale Mandapat,Gerard Manning,Marco Mariotti,Robert Mata,Tittu Mathew,Tobias Neumann,Tobias Neumann,Irene Newsham,Dinh Ngoc Ngo,Maria Ninova,Geoffrey Okwuonu,Fiona Ongeri,William J. Palmer,Shobha Patil,Pedro Patraquim,Christopher Pham,Ling-Ling Pu,Nicholas H. Putman,Catherine Rabouille,Olivia Mendivil Ramos,Adelaide C. Rhodes,Helen E. Robertson,Hugh M. Robertson,Matthew Ronshaugen,Julio Rozas,Nehad Saada,Alejandro Sánchez-Gracia,Steven E. Scherer,Andrew M. Schurko,Kenneth W. Siggens,DeNard Simmons,Anna Stief,Eckart Stolle,Maximilian J. Telford,Kristin Tessmar-Raible,Rebecca Thornton,Maurijn van der Zee,Arndt von Haeseler,Arndt von Haeseler,James M Williams,Judith H. Willis,Yuanqing Wu,Xiaoyan Zou,Daniel Lawson,Donna M. Muzny,Kim C. Worley,Richard A. Gibbs,Michael Akam,Stephen Richards +112 more
TL;DR: The phylogenetic position of myriapods allows us to identify where in arthropod phylogeny several particular molecular mechanisms and traits emerged, and concludes that juvenile hormone signalling evolved with the emergence of the exoskeleton in the arthropods and that RR-1 containing cuticle proteins evolved in the lineage leading to Mandibulata.
Journal ArticleDOI
Genomic Signatures of Cooperation and Conflict in the Social Amoeba
Elizabeth A. Ostrowski,Yufeng Shen,Xiangjun Tian,Richard Sucgang,Huaiyang Jiang,Jiaxin Qu,Mariko Katoh-Kurasawa,Debra A. Brock,Christopher Dinh,Fremiet Lara-Garduno,Sandra L. Lee,Christie Kovar,Huyen Dinh,Viktoriya Korchina,LaRonda Jackson,Shobha Patil,Yi Han,Lesley S. Chaboub,Gad Shaulsky,Donna M. Muzny,Kim C. Worley,Richard A. Gibbs,Stephen Richards,Adam Kuspa,Joan E. Strassmann,David C. Queller +25 more
TL;DR: The results reveal the evolutionary dynamics of cooperation and cheating and underscore how sequence-based approaches can be used to elucidate the history of conflicts that are difficult to observe directly.