Showing papers by "Hongbin Liu published in 2021"

A critical review on livestock manure biorefinery technologies: Sustainability, challenges, and future perspectives

Abstract: An ever increasing demand for animal protein products has posed serious challenges for managing the increasing quantities of livestock manure. The choice of treatment technologies is still a complicated task and considerable debates over this issue still continue. To build a clearer picture of manure treatment framework, this study was conducted to review the most frequently employed manure management technologies from their state of the art, challenges, sustainability, environmental regulations and incentives, and improvement strategies perspectives. The results showed that most treatment technologies have focused on the solid fraction of manure while the liquid fraction still remains a potential environmental threat. Compared to other waste to energy solutions, anaerobic digestion is the most mature technology to upgrade manure's organic matter into renewable energy, however the problems associated with high investment costs, operating parameters, manure collection, and digestate management have hindered its developments in rural areas in developing countries. Bio-oil production through hydrothermal liquification is also a promising solution, as it can directly convert the wet manure into biofuel. However, lipid-poor nature of manure, operational difficulties, and the need for downstream process to remove nitrogenous compounds from the final product necessitate further research. Livestock manure management (both solid and liquid fractions) under biorefinery approach seems an inevitable solution for future sustainable development to meet circular bioeconomy requirements. Much research is still required to establish a systematic framework based on regional requirements to develop an integrated manure nutrient recycling and manure management planning with minimum environmental risks and maximum profit.

Effects of biochar application with fertilizer on soil microbial biomass and greenhouse gas emissions in a peanut cropping system

Abstract: This study investigated the effects of biochar application with organic or mineral fertilizers on soil microbial biomass, and associated emissions of CO2 and CH4 under field settings planted with p...

Destruction and reinstatement of coastal hypoxia in the South China Sea off the Pearl River estuary

Abstract: . We examined the evolution of intermittent hypoxia off the Pearl River estuary based on three cruise legs conducted in July 2018: one during severe hypoxic conditions before the passage of a typhoon and two post-typhoon legs showing destruction of the hypoxia and its reinstatement. The lowest ever recorded regional dissolved oxygen (DO) concentration of 3.5 µ mol kg −1 ( ∼ 0.1 mg L −1 ) was observed in bottom waters during leg 1, with an ∼ 660 km 2 area experiencing hypoxic conditions (DO 63 µ mol kg −1 ). Hypoxia was completely destroyed by the typhoon passage but was quickly restored ∼ 6 d later, resulting primarily from high biochemical oxygen consumption in bottom waters that averaged 14.6 ± 4.8 µ mol O 2 kg −1 d −1 . The shoreward intrusion of offshore subsurface waters contributed to an additional 8.6 ± 1.7 % of oxygen loss during the reinstatement of hypoxia. Freshwater inputs suppressed wind-driven turbulent mixing, stabilizing the water column and facilitating the hypoxia formation. The rapid reinstatement of summer hypoxia has a shorter timescale than the water residence time, which is however comparable with that of its initial disturbance from frequent tropical cyclones that occur throughout the wet season. This has important implications for better understanding the intermittent nature of hypoxia and predicting coastal hypoxia in a changing climate.

Potential of paddy drainage optimization to water and food security in China

Abstract: Rice production not only consumes large amounts of irrigation water and fertilizer, but also poses a high risk of water pollution by delivering nitrogen (N) through surface runoff. To ensure sustainable rice production, many water-saving irrigation managements have been proposed and implemented, but drainage water managements receive far less attention and need to be further explored. This study aimed to determine the paddy drainage optimization management and assess its potential to water and food security in China via different scale methods (from pot and field experiments to national assessment). The national investigation of water and N fertilizer use in paddy fields implied that diffuse N pollution was expected to continue increasing, especially in the Yangtze river basin. Two-years field experiments at typical sites identified that the tillering and jointing–booting stages were critical risk stages for N runoff loss, and pot experiments on the critical stages were conducted to determine the optimal drainage water level without yield reduction. Then, the applicability of paddy drainage optimization was verified and evaluated by drainage optimization field experiment and precipitation characteristics analysis. Finally, the potential of drainage optimization on mitigating N runoff loss was estimated by scenario analysis at the national scale. After implementing paddy drainage optimization in field experiments, surface runoff and nitrogen runoff loss decreased by 27.97–78.94% and 35.17–67.95%, respectively, without affecting rice yield. By full implementation of the optimal drainage and fertilization management, N runoff loss could be reduced by 0.19 Tg yr−1 at the national scale. These results suggest that paddy drainage optimization is an agro-ecosystems friendly water management for sustainable rice production, and has notable potential to ensure water and food security in China.

Distinct interaction effects of warming and anthropogenic input on diatoms and dinoflagellates in an urbanized estuarine ecosystem.

Abstract: Diatoms and dinoflagellates are two major bloom-forming phytoplankton groups in coastal ecosystems and their dominances will notably affect the marine ecosystems. By analyzing an 18-year monthly monitoring dataset (2000-2017) in the Pearl River Estuary (one of the most highly urbanized and populated estuarine in the world), we observe an increasing trend of the diatom to dinoflagellate ratio (Diatom/Dino). As revealed by multiple statistical models (generalized additive mixed model, random forest, and gradient boosting algorithms), both groups are positively correlated with temperature. Diatoms are positively correlated with nitrate and negatively correlated with ammonium while dinoflagellates show an opposite pattern. The Diatom/Dino trend is explained by an altered nutrient composition caused by a decadal increase in anthropogenic input, at which nitrate increased rapidly while ammonium and phosphate were relatively constant. Regarding the interaction of warming and nutrient dynamics, we observe an additive effect of warming and nitrate enrichment that promotes the increase in diatom cell density, while the dinoflagellate cell density only increases with warming when nutrients are depleted. Our models predict that the Diatom/Dino ratio will further increase with increasing anthropogenic input and global warming in subtropical estuarine ecosystems with nitrate as the dominant inorganic nitrogen; its ecological consequences are worthy of further investigation.

What controls microzooplankton biomass and herbivory rate across marginal seas of China

Abstract: Microzooplankton are the primary herbivores and nutrient regenerators in the marine food web, but their importance is often underestimated, and the quantitative relationships between environmental factors and the biomass and herbivory rate of microzooplankton remain obscure. To fill this gap, we conducted 224 dilution experiments to measure microzooplankton biomass and herbivory rate across a vast area of the marginal seas of China. To gain the potential mechanisms controlling microzooplankton herbivory, we also use a model that combines the Metabolic Theory of Ecology and the functional responses of grazing to quantify the effects of temperature, phytoplankton biomass, and microzooplankton biomass on microzooplankton grazing rate. We estimate an activation energy of 0.51 eV of microzooplankton and found that the Holling III function best described the functional response of microzooplankton grazing with a maximal ingestion rate of 4.76 d −1 at 15°C and a half-saturation constant of 0.27 μM N. We also find that microzooplankton biomass scales with phytoplankton biomass with an exponent of 0.77, consistent with the general 3/4 scaling law found in other ecosystems. This scaling relationship is accompanied by a shift from ciliates to heterotrophic dinoflagellates with increasing phytoplankton biomass. Our results provide empirical patterns that will be vital to parameterize and validate marine ecosystem models, particularly in China seas.

Are temperature sensitivities of Prochlorococcus and Synechococcus impacted by nutrient availability in the subtropical northwest Pacific

Abstract: Temperature sensitivity of phytoplankton growth rate is crucial for predicting the effect of global warming on oceanic primary productivity and the efficiency of the biological carbon pump. To investigate how nutrient availability affects the temperature sensitivity of phytoplankton growth, we estimated the activation energy (Ea) of two dominant picocyanobacteria (Prochlorococcus and Synechococcus) in the subtropical northwest Pacific using short-term temperature modulated dilution experiments. We also conducted a meta-analysis on a compiled dataset of picocyanobacteria growth rate estimated by the dilution technique. Our results revealed that the Ea of Synechococcus growth rate under in situ nutrient conditions was lower than under nutrient-replete conditions. The growth response of Synechococcus to warming could, therefore, be weaker under nutrient-limiting conditions than in nutrient-replete waters. In contrast, Ea values of Prochlorococcus growth rate showed no difference between the two nutrient supply scenarios. We also found that the reduced Ea of Synechococcus growth was most likely related to the increasing trend of the half-saturation constants for growth with increasing temperature. The temperature sensitivity of half-saturation constants and the level of nutrient limitation can counteract the response of Synechococcus growth rate to increasing temperature. Our results highlight the importance of considering nutrient availability when evaluating the responses of phytoplankton growth and primary production to climate warming, especially in the oligotrophic ocean.

Effect of river plume on phytoplankton community structure in Zhujiang River estuary

Abstract: To examine the phytoplankton assemblages and the effect of diluted waters on them, a research cruise was conducted from July 19 to August 7, 2015 in the Zhujiang (Pearl) River estuary in the northern South China Sea (21°N-23.5°N, 111°E-117°E). Samples were collected from 65 stations including one for time-series sampling. A total of 212 phytoplankton taxa were identified from 61 genera belonging to 4 phyla. Among them, 122 species identified from 42 genera of Bacillariophyta and 83 species from 15 genera of Pyrrophyta. Chain-forming diatoms dominated the phytoplankton community where Pseudo-nitzschia delicatissima, Guinardia striata, Thalassionema nitzschioides, and P. pungens comprised about 52% of the total abundance. However, higher cell abundances concentrated on both sides of the estuary, because of low salinity and high nutrients brought by diluted water. In addition, Canonical Correspondence Analysis revealed that salinity and dissolved inorganic nitrogen shaped the species composition in the study area. Furthermore, the Jaccard similarity index showed prevailing high similarity in the distribution of species in low-salinity diluted waters, and the Bray-Curtis similarity depicted distinguished grouping for phytoplankton assemblages along the salinity gradient. However, phytoplankton diel vertical cycles showed maximum abundance occurred at 2:00 am, which was mainly contributed by benthic phytoplankton species Pseudo-nitzschia spp. and T. nitzschioides.

Study of Heavy Metals and Microbial Communities in Contaminated Sediments Along an Urban Estuary

Abstract: Estuarine sediments are increasingly contaminated by heavy metals as a result of urbanization and human activities. Continuous multi-heavy metal accumulation in the ecosystem can provoke new effects on top of the complex environmental interactions already present in estuarine ecosystems. It is important to study their integrated influence on imperative microbial communities to reflect on the environmental and ecological risks they may impose. Inductively coupled plasma optical emission spectroscopy analysis for five metals Cd, Cr, Cu, Pb and Zn showed that Cr and Cu concentrations in intertidal sediments of the urbanized Yangtze River estuary in China have consistently exceeded respective threshold effect concentration levels. The geo-accumulation and potential ecological risk index results of the five metals showed that all sampling sites were weakly to moderately polluted, and at considerable to high ecological risk, respectively. Redundancy and correlation analyses showed that Zn followed by Cr in the ecosystem were explanatory of the shifts in recorded microbial community structures. However, the spatial variation in metal concentrations did not correspond to the selection of metal resistance genes. Unlike many other dominant bacterial taxa, most of the sulfate-reducing bacteria and associated sulfate respiration as the dominant microbially-contributed ecological function were found to negatively correlate with Zn and total heavy metal pollution. Zn concentration was proposed to be a potent indicator for heavy metal pollution-associated microbial community compositional shifts under urbanized estuarine conditions. The associations between heavy metals and estuarine microbial communities in this study demonstrate the influence of heavy metals on microbial community structure and adaptations that is often overshadowed by environmental factors (i.e. salinity and nutrients).

Gamma4: a genetically versatile Gammaproteobacterial nifH phylotype that is widely distributed in the North Pacific Ocean.

Abstract: Despite the increasing reports of non-cyanobacterial diazotrophs (NCDs) in pelagic waters, only one NCD (GammaA) has been relatively well described, whose genome and physiology are still unclear. Here we present a comprehensive analysis of the biogeography and ecophysiology of a widely distributed NCD, Gamma4. Gamma4 was the most abundant Gammaproteobacterial NCD along transects across the subtropical North Pacific. Using quantitative PCR, Gamma4 was detectable throughout the surface waters of North Pacific (7°N-55°N, 138°E-80°W), whereas GammaA was detected at <2/3 of the stations. Gamma4 was abundant during autumn-winter and positively correlated with chlorophyll a, while GammaA thrived during spring-summer and was positively correlated with temperature. Environmental clones affiliated with Gamma4 were widely detected in pelagic waters, oxygen minimum zones and even dinoflagellate microbiomes. By analysing the metabolic potential of a genome of Gamma4 reconstructed from the Tara Oceans dataset, we suggest that Gamma4 is a versatile heterotrophic NCD equipped with multiple strategies in scavenging phosphate (and iron) and for respiratory protection of nitrogenase. The transcription of nitrogenase genes is putatively regulated by Fnr-NifL-NifA and GlnD-GlnK systems that respond to intracellular oxygen and glutamate concentration. These results provide important implications for the potential life strategies of pelagic NCDs.

Evidence for mixotrophy in pico-chlorophytes from a new Picochlorum (Trebouxiophyceae) strain.

Abstract: Mixotrophs are increasingly recognized for their wide distribution in aquatic ecosystems and significant contributions to biogeochemical cycling. Many taxa within the phyla Chrysophyta, Cryptophyta, and Haptophyta are capable of phago-mixotrophy, however, phagotrophy in the Chlorophyta remains controversial due to insufficient research and solid evidence. In this study, we identified a new strain, Picochlorum sp. GLMF1 (Trebouxiophyceae), using 18S rRNA gene analysis and morphological observations. It displayed multi-cell division through autosporulation (two- or four-cell daughters) and has two unequal flagella that have never been reported in the genus Picochlorum. By using multiple methods, including 3D bioimaging analysis, acidic food vacuole-like compartment staining, and prey reduction calculation, we discovered and confirmed bacterivory in Picochlorum, which provided strong evidence for phago-mixotrophy in this green alga. In addition, we found that Picochlorum sp. GLMF1 cannot grow under complete darkness or prey-depleted conditions, suggesting that both light and bacteria are indispensable for this strain, and its mixotrophic nutrition mode is obligate. Like other phago-phototrophs, Picochlorum sp. GLMF1 is capable of regulating their growth and ingestion rates according to light intensity and inorganic nutrient concentration. The confirmation of mixotrophy in this Picochlorum strain advances our understanding of the trophic roles of green algae, as well as the photosynthetic picoeukaryotes, in marine microbial food webs.

Nutrient-imbalanced conditions shift the interplay between zooplankton and gut microbiota.

Abstract: Nutrient stoichiometry of phytoplankton frequently changes with aquatic ambient nutrient concentrations, which is mainly influenced by anthropogenic water treatment and the ecosystem dynamics. Consequently, the stoichiometry of phytoplankton can markedly alter the metabolism and growth of zooplankton. However, the effects of nutrient-imbalanced prey on the interplay between zooplankton and their gut microbiota remain unknown. Using metatranscriptome, a 16 s rRNA amplicon-based neutral community model (NCM) and experimental validation, we investigated the interactions between Daphnia magna and its gut microbiota in a nutrient-imbalanced algal diet. Our results showed that in nutrient-depleted water, the nutrient-enriched zooplankton gut stimulated the accumulation of microbial polyphosphate in fecal pellets under phosphorus limitation and the microbial assimilation of ammonia under nitrogen limitation. Compared with the nutrient replete group, both N and P limitation markedly promoted the gene expression of the gut microbiome for organic matter degradation but repressed that for anaerobic metabolisms. In the nutrient limited diet, the gut microbial community exhibited a higher fit to NCM (R2 = 0.624 and 0.781, for N- and P-limitation, respectively) when compared with the Control group (R2 = 0.542), suggesting increased ambient-gut exchange process favored by compensatory feeding. Further, an additional axenic grazing experiment revealed that the growth of D. magna can still benefit from gut microbiota under a nutrient-imbalanced diet. Together, these results demonstrated that under a nutrient-imbalanced diet, the microbes not only benefit themselves by absorbing excess nutrients inside the zooplankton gut but also help zooplankton to survive during nutrient limitation.

Distribution and activity of ammonia-oxidizers on the size-fractionated particles in the Pearl River estuary

Abstract: To distinguish between the distribution and activity of ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) in the Pearl River estuary (PRE), we investigated the DNA- and cDNA-based -amoA and arch-amoA genes on three size-fractionated particles of >3.0 μm, 0.45‒3.0 μm, and 0.22‒0.45 μm. Results showed that AOB were more abundant in the freshwater with high concentrations of ammonium (NH4+) and low dissolved oxygen, whereas AOA were dominant in the NH4+-depleted seawater and sensitive to temperature. Obvious shifts in ammonia-oxidizing communities were found along the salinity gradient in the PRE. AOB clearly presented a particle-associated nature, as evidenced by higher relative abundance of amoA genes attached to the large particles (> 3.0 μm) and their transcripts exclusively detected on this fraction. Moreover, higher transcriptional activity (indicated by the cDNA/DNA ratio) of AOB on the large particles, suggesting AOB were actively involved in ammonia oxidation despite their lower abundance in the mid- and lower estuarine regions. In contrast, AOA exhibited higher transcriptional activity on the 0.45‒3.0 µm and 0.22‒0.45 μm particles, implying the free-living strategy of these microbes. Together, these findings from field observations provide useful information on the ecological strategies of ammonia-oxidizing communities in response to different environmental conditions.

Transcriptomic response of Daphnia magna to nitrogen- or phosphorus-limited diet.

Abstract: Effects of nutrient-imbalanced diet on the growth and fitness of zooplankton were widely reported as key issues to aquatic ecology. However, little is known about the molecular mechanisms driving the physiological changes of zooplankton under nutrient stress.In this study, we investigated the physiological fitness and transcriptomic response of Daphnia magna when exposed to nitrogen (N)-limited or phosphorus (P)-limited algal diet (Chlamydomonas reinhardtii) compared to regular algae (N and P saturated).D. magna showed higher ingestion rates and overexpression of genes encoding digestive enzymes when fed with either N-limited or P-limited algae, reflecting the compensatory feeding. Under P-limitation, both growth rate and reproduction rate of D. magna were greatly reduced, which could be attributed to the downregulated genes within the pathways of cell cycle and DNA replication. Growth rate of D. magna under N-limitation was similar to normal group, which could be explained by the high methylation level (by degradation of methionine) supporting the body development.Phenotypic changes of D. magna under nutrient stress were explained by gene and pathway regulations from transcriptome data. Generally, D. magna invested more on growth under N-limitation but kept maintenance (e.g., cell structure and defense to external stress) in priority under P-limitation. Post-translational modifications (e.g., methylation and protein folding) were important for D. magna to deal with nutrient constrains.This study reveals the fundamental mechanisms of zooplankton in dealing with elemental imbalanced diet and sheds light on the transfer of energy and nutrient in aquatic ecosystems.