J
Jane Oja
Researcher at University of Tartu
Publications - 27
Citations - 3350
Jane Oja is an academic researcher from University of Tartu. The author has contributed to research in topics: Biology & Medicine. The author has an hindex of 8, co-authored 19 publications receiving 2370 citations. Previous affiliations of Jane Oja include Qatar University.
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Journal ArticleDOI
Towards a unified paradigm for sequence-based identification of fungi
Urmas Kõljalg,Urmas Kõljalg,R. Henrik Nilsson,Kessy Abarenkov,Leho Tedersoo,Andy F. S. Taylor,Andy F. S. Taylor,Mohammad Bahram,Scott T. Bates,Thomas D. Bruns,Johan Bengtsson-Palme,Tony M. Callaghan,Brian Douglas,Tiia Drenkhan,Ursula Eberhardt,Margarita Dueñas,Tine Grebenc,Gareth W. Griffith,Martin Hartmann,Paul M. Kirk,Petr Kohout,Petr Kohout,Ellen Larsson,Björn D. Lindahl,Robert Lücking,María P. Martín,P. Brandon Matheny,Nhu H. Nguyen,Tuula Niskanen,Jane Oja,Kabir G. Peay,Ursula Peintner,Marko Peterson,Kadri Põldmaa,Lauri Saag,Irja Saar,Arthur Schüßler,James A. Scott,Carolina Senés,Matthew E. Smith,Ave Suija,Ave Suija,D. Lee Taylor,M. Teresa Telleria,Michael Weiss,Karl-Henrik Larsson +45 more
TL;DR: All fungal species represented by at least two ITS sequences in the international nucleotide sequence databases are now given a unique, stable name of the accession number type, and the term ‘species hypothesis’ (SH) is introduced for the taxa discovered in clustering on different similarity thresholds.
Journal ArticleDOI
FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles
Sergei Põlme,Sergei Põlme,Kessy Abarenkov,R. Henrik Nilsson,Björn D. Lindahl,Karina E. Clemmensen,Håvard Kauserud,Nhu H. Nguyen,Rasmus Kjøller,Scott T. Bates,Petr Baldrian,Tobias Guldberg Frøslev,Kristjan Adojaan,Alfredo Vizzini,Ave Suija,Donald H. Pfister,Hans Otto Baral,Helle Järv,Hugo Madrid,Hugo Madrid,Jenni Nordén,Jian-Kui Liu,Julia Pawłowska,Kadri Põldmaa,Kadri Pärtel,Kadri Runnel,Karen Hansen,Karl-Henrik Larsson,Kevin D. Hyde,Marcelo Sandoval-Denis,Matthew E. Smith,Merje Toome-Heller,Nalin N. Wijayawardene,Nelson Menolli,Nicole K. Reynolds,Rein Drenkhan,Sajeewa S. N. Maharachchikumbura,Tatiana Baptista Gibertoni,Thomas Læssøe,William J. Davis,Yuri Tokarev,Adriana Corrales,Adriene Mayra Soares,Ahto Agan,A. R. Machado,Andrés Argüelles-Moyao,Andrew P. Detheridge,Angelina de Meiras-Ottoni,Annemieke Verbeken,Arun Kumar Dutta,Bao-Kai Cui,C. K. Pradeep,César Marín,Daniel E. Stanton,Daniyal Gohar,Dhanushka N. Wanasinghe,Eveli Otsing,Farzad Aslani,Gareth W. Griffith,Thorsten Lumbsch,Hans-Peter Grossart,Hans-Peter Grossart,Hossein Masigol,Ina Timling,Inga Hiiesalu,Jane Oja,John Y. Kupagme,József Geml,Julieta Alvarez-Manjarrez,Kai Ilves,Kaire Loit,Kalev Adamson,Kazuhide Nara,Kati Küngas,Keilor Rojas-Jimenez,Krišs Bitenieks,Laszlo Irinyi,Laszlo Irinyi,Laszlo Nagy,Liina Soonvald,Li-Wei Zhou,Lysett Wagner,M. Catherine Aime,Maarja Öpik,María Isabel Mujica,Martin Metsoja,Martin Ryberg,Martti Vasar,Masao Murata,Matthew P. Nelsen,Michelle Cleary,Milan C. Samarakoon,Mingkwan Doilom,Mohammad Bahram,Mohammad Bahram,Niloufar Hagh-Doust,Olesya Dulya,Peter R. Johnston,Petr Kohout,Qian Chen,Qing Tian,Rajasree Nandi,Rasekh Amiri,Rekhani H. Perera,Renata dos Santos Chikowski,Renato Lucio Mendes-Alvarenga,Roberto Garibay-Orijel,Robin Gielen,Rungtiwa Phookamsak,Ruvishika S. Jayawardena,Saleh Rahimlou,Samantha C. Karunarathna,Saowaluck Tibpromma,Shawn P. Brown,Siim-Kaarel Sepp,Sunil Mundra,Sunil Mundra,Zhu Hua Luo,Tanay Bose,Tanel Vahter,Tarquin Netherway,Teng Yang,Tom W. May,Torda Varga,Wei Li,Victor R. M. Coimbra,Virton Rodrigo Targino de Oliveira,Vitor Xavier de Lima,Vladimir S. Mikryukov,Yong-Zhong Lu,Yosuke Matsuda,Yumiko Miyamoto,Urmas Kõljalg,Urmas Kõljalg,Leho Tedersoo,Leho Tedersoo +135 more
TL;DR: Fungal traits and character database FungalTraits operating at genus and species hypothesis levels is presented in this article, which includes 17 lifestyle related traits of fungal and Stramenopila genera.
Journal ArticleDOI
Host preference and network properties in biotrophic plant-fungal associations.
Sergei Põlme,Sergei Põlme,Mohammad Bahram,Mohammad Bahram,Hans Jacquemyn,Peter G. Kennedy,Petr Kohout,Petr Kohout,Petr Kohout,Mari Moora,Jane Oja,Maarja Öpik,Lorenzo Pecoraro,Lorenzo Pecoraro,Lorenzo Pecoraro,Leho Tedersoo +15 more
TL;DR: Network properties among a broad suite of plant-associated fungi were largely comparable and generally unrelated to phylogenetic distance among hosts, and network metrics were predominantly affected by sampling and matrix properties, indicating the importance of study design in properly inferring ecological patterns.
Journal ArticleDOI
Temporal patterns of orchid mycorrhizal fungi in meadows and forests as revealed by 454 pyrosequencing
TL;DR: Temporal changes in OrM fungal communities in roots of certain species indicate selection of suitable fungal species by plants, but it remains to be elucidated whether these shifts depend on functional differences inside roots, seasonality, climate or succession.
Journal ArticleDOI
Temperature and pH define the realised niche space of arbuscular mycorrhizal fungi
John Davison,Mari Moora,Marina Semchenko,Marina Semchenko,Sakeenah Adenan,Talaat Ahmed,A. A. Akhmetzhanova,Juha M. Alatalo,Saleh Al-Quraishy,Elena A. Andriyanova,Sten Anslan,Mohammad Bahram,Amgaa Batbaatar,Charlotte Brown,C. Guillermo Bueno,James F. Cahill,Juan Jose Cantero,Brenda B. Casper,M. M. Cherosov,Saida Chideh,Ana P Coelho,Matthew Coghill,Guillaume Decocq,Sergey Dudov,Ezequiel Fabiano,Vladimir E Fedosov,Lauchlan H. Fraser,Sydney I. Glassman,Aveliina Helm,Hugh A. L. Henry,Bruno Hérault,Indrek Hiiesalu,Inga Hiiesalu,Wael N. Hozzein,Wael N. Hozzein,Petr Kohout,Petr Kohout,Urmas Kõljalg,Kadri Koorem,Lauri Laanisto,Ülo Mander,Ladislav Mucina,Ladislav Mucina,Jean-Pierre Munyampundu,Lena Neuenkamp,Lena Neuenkamp,Ülo Niinemets,Casper Nyamukondiwa,Jane Oja,Vladimir G. Onipchenko,Meelis Pärtel,Cherdchai Phosri,Sergei Põlme,Sergei Põlme,Kersti Püssa,Argo Ronk,Alessandro Saitta,Olivia Semboli,Siim-Kaarel Sepp,Alexey Seregin,Surya Sudheer,Clara P. Peña-Venegas,Claudia Paz,Tanel Vahter,Martti Vasar,Annelies J. Veraart,Leho Tedersoo,Martin Zobel,Martin Zobel,Maarja Öpik +69 more
TL;DR: In this article, the realised niches of arbuscular mycorrhizal (AM) virtual taxa (VT; approximately species-level phylogroups) were modelled and found that environmental and spatial variables jointly explained VT distribution worldwide, with temperature and pH being the most important abiotic drivers.