J
Jeroen Raes
Researcher at Katholieke Universiteit Leuven
Publications - 293
Citations - 85097
Jeroen Raes is an academic researcher from Katholieke Universiteit Leuven. The author has contributed to research in topics: Microbiome & Medicine. The author has an hindex of 84, co-authored 240 publications receiving 66805 citations. Previous affiliations of Jeroen Raes include Flanders Institute for Biotechnology & Université catholique de Louvain.
Papers
More filters
Journal ArticleDOI
Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
Ramiro Logares,Shinichi Sunagawa,Guillem Salazar,Francisco M. Cornejo-Castillo,Isabel Ferrera,Hugo Sarmento,Hugo Sarmento,Pascal Hingamp,Hiroyuki Ogata,Hiroyuki Ogata,Colomban de Vargas,Gipsi Lima-Mendez,Jeroen Raes,Julie Poulain,Olivier Jaillon,Olivier Jaillon,Olivier Jaillon,Patrick Wincker,Patrick Wincker,Patrick Wincker,Stefanie Kandels-Lewis,Eric Karsenti,Peer Bork,Silvia G. Acinas +23 more
TL;DR: It is shown that by overcoming PCR biases related to amplification and primer mismatch, mi tags may provide more realistic estimates of community richness and evenness than amplicon 454 tags, and is now economically feasible given the dramatic reduction in high-throughput sequencing costs.
Journal ArticleDOI
Prediction of effective genome size in metagenomic samples
TL;DR: A novel computational approach to predict effective genome size (EGS; a measure that includes multiple plasmid copies, inserted sequences, and associated phages and viruses) from short sequencing reads of environmental genomics (or metagenomics) projects is introduced.
Journal ArticleDOI
Primary sclerosing cholangitis is characterised by intestinal dysbiosis independent from IBD
João Sabino,Sara Vieira-Silva,Kathleen Machiels,Marie Joossens,Gwen Falony,Vera Ballet,Marc Ferrante,Gert Van Assche,Schalk Van der Merwe,Severine Vermeire,Jeroen Raes +10 more
TL;DR: The first report of PSC-associated faecal dysbiosis, independent from IBD signatures, is presented, suggesting the intestinal microbiota could be a contributing factor in PSC pathogenesis.
Journal ArticleDOI
Nonsense-mediated mRNA decay factors act in concert to regulate common mRNA targets
TL;DR: It is shown that NMD components are required for cell proliferation in Drosophila and that phenotypic differences observed across species following inhibition of NMD can be largely attributed to changes in the repertoire of regulated genes.
Journal ArticleDOI
A global ocean atlas of eukaryotic genes
Quentin Carradec,Eric Pelletier,Corinne Da Silva,Adriana Alberti,Yoann Seeleuthner,Romain Blanc-Mathieu,Gipsi Lima-Mendez,Fabio Rocha,Leila Tirichine,Karine Labadie,Amos Kirilovsky,Alexis Bertrand,Stefan Engelen,Mohammed-Amin Madoui,Raphaël Méheust,Julie Poulain,Sarah Romac,Sarah Romac,Daniel J. Richter,Daniel J. Richter,Genki Yoshikawa,Céline Dimier,Céline Dimier,Céline Dimier,Stefanie Kandels-Lewis,Marc Picheral,Sarah Searson,Olivier Jaillon,Jean-Marc Aury,Eric Karsenti,Eric Karsenti,Matthew B. Sullivan,Shinichi Sunagawa,Peer Bork,Fabrice Not,Fabrice Not,Pascal Hingamp,Jeroen Raes,Lionel Guidi,Lionel Guidi,Hiroyuki Ogata,Colomban de Vargas,Colomban de Vargas,Daniele Iudicone,Chris Bowler,Patrick Wincker +45 more
TL;DR: This article used a metatranscriptomics approach to capture expressed genes in open ocean Tara Oceans stations across four organismal size fractions, and the individual sequence reads cluster into 116 million unigenes representing the largest reference collection of eukaryotic transcripts from any single biome.