J
Jieyi Xiong
Researcher at CAS-MPG Partner Institute for Computational Biology
Publications - 12
Citations - 707
Jieyi Xiong is an academic researcher from CAS-MPG Partner Institute for Computational Biology. The author has contributed to research in topics: Macaque & Exon. The author has an hindex of 8, co-authored 11 publications receiving 589 citations. Previous affiliations of Jieyi Xiong include Max Delbrück Center for Molecular Medicine.
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Journal ArticleDOI
Widespread splicing changes in human brain development and aging
Pavel V. Mazin,Pavel V. Mazin,Jieyi Xiong,Xiling Liu,Zheng Yan,Xiaoyu Zhang,Xiaoyu Zhang,Mingshuang Li,Mingshuang Li,Liu He,Mehmet Somel,Mehmet Somel,Yuan Yuan,Yuan Yuan,Yi-Ping Phoebe Chen,Na Li,Yuhui Hu,Ning Fu,Zhibin Ning,Rong Zeng,Hongyi Yang,Wei Chen,Wei Chen,Mikhail S. Gelfand,Philipp Khaitovich,Philipp Khaitovich +25 more
TL;DR: Across lifespan, splicing changes followed discrete patterns that could be linked to neural functions, and associated with the expression profiles of the corresponding splicing factors, and were abundant in both of the brain regions studied.
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Epigenomic Profiling of Human CD4(+) T Cells Supports a Linear Differentiation Model and Highlights Molecular Regulators of Memory Development
Pawel Durek,Karl Nordström,Gilles Gasparoni,Abdulrahman Salhab,Christopher Kressler,Melanie de Almeida,Kevin Bassler,Thomas Ulas,Florian Schmidt,Jieyi Xiong,Petar Glažar,Filippos Klironomos,Anupam Sinha,Sarah Kinkley,Xinyi Yang,Laura Arrigoni,Azim Dehghani Amirabad,Fatemeh Behjati Ardakani,Lars Feuerbach,Oliver Gorka,Peter Ebert,Fabian Müller,Na Li,Stefan Frischbutter,Stephan Schlickeiser,Carla Cendón,Sebastian Fröhler,Bärbel Felder,Nina Gasparoni,Charles D. Imbusch,Barbara Hutter,Gideon Zipprich,Yvonne Tauchmann,Simon Reinke,Georgi I. Wassilew,Ute Hoffmann,Andreas S. Richter,Lina Sieverling,Hyun-Dong Chang,Uta Syrbe,Ulrich Kalus,Jürgen Eils,Benedikt Brors,Thomas Manke,Jürgen Ruland,Thomas Lengauer,Nikolaus Rajewsky,Wei Chen,Jun Dong,Birgit Sawitzki,Ho-Ryun Chung,Philip Rosenstiel,Marcel H. Schulz,Joachim L. Schultze,Andreas Radbruch,Jörn Walter,Alf Hamann,Julia K. Polansky +57 more
TL;DR: Deep epigenomes comprising genome-wide profiles of DNA methylation, histone modifications, DNA accessibility, and coding and non-coding RNA expression in naive, central-, effector-, and terminally differentiated Tmem cells from blood and bone marrow were generated and candidate master regulators of Tmem cell differentiation were identified.
Journal ArticleDOI
Organization and Evolution of Brain Lipidome Revealed by Large-Scale Analysis of Human, Chimpanzee, Macaque, and Mouse Tissues
Katarzyna Bozek,Katarzyna Bozek,Yuning Wei,Zheng Yan,Xiling Liu,Jieyi Xiong,Masahiro Sugimoto,Masaru Tomita,Svante Pääbo,Chet C. Sherwood,Patrick R. Hof,John J. Ely,Yan Li,Dirk Steinhauser,Lothar Willmitzer,Patrick Giavalisco,Philipp Khaitovich +16 more
TL;DR: A large-scale mass spectrometry-based analysis of the lipid composition of three brain regions as well as kidney and skeletal muscle of humans, chimpanzees, rhesus macaques, and mice provides the first insights into the role of lipids in human brain evolution.
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Combining transcription factor binding affinities with open-chromatin data for accurate gene expression prediction
Florian Schmidt,Florian Schmidt,Nina Gasparoni,Gilles Gasparoni,Kathrin Gianmoena,Cristina Cadenas,Julia K. Polansky,Peter Ebert,Karl Nordström,Matthias Barann,Anupam Sinha,Sebastian Froehler,Jieyi Xiong,Azim Dehghani Amirabad,Azim Dehghani Amirabad,Fatemeh Behjati Ardakani,Fatemeh Behjati Ardakani,Barbara Hutter,Gideon Zipprich,Baerbel Felder,Jürgen Eils,Benedikt Brors,Wei Chen,Jan G. Hengstler,Alf Hamann,Thomas Lengauer,Philip Rosenstiel,Jörn Walter,Marcel H. Schulz +28 more
TL;DR: A novel segmentation-based method, TEPIC, is reported to predict TF binding by combining sets of OCRs with position weight matrices, and finds low affinity binding sites to improve the ability to explain gene expression variability compared to the standard presence/absence classification of binding sites.
Journal ArticleDOI
Exceptional Evolutionary Divergence of Human Muscle and Brain Metabolomes Parallels Human Cognitive and Physical Uniqueness
Katarzyna Bozek,Yuning Wei,Zheng Yan,Xiling Liu,Jieyi Xiong,Masahiro Sugimoto,Masaru Tomita,Svante Pääbo,Raik Pieszek,Chet C. Sherwood,Patrick R. Hof,John J. Ely,Dirk Steinhauser,Lothar Willmitzer,Jens Bangsbo,Ola Hansson,Josep Call,Patrick Giavalisco,Philipp Khaitovich +18 more
TL;DR: Accelerated evolution of the human brain and muscle metabolomes reflects the authors' unique cognitive and physical capacities.