M
Malika Sud
Researcher at Broad Institute
Publications - 6
Citations - 1162
Malika Sud is an academic researcher from Broad Institute. The author has contributed to research in topics: Immune system & Stromal cell. The author has an hindex of 5, co-authored 5 publications receiving 475 citations.
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Journal ArticleDOI
Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis
Christopher Smillie,Moshe Biton,Jose Ordovas-Montanes,Keri M. Sullivan,Grace Burgin,Daniel B. Graham,Rebecca H. Herbst,Rebecca H. Herbst,Noga Rogel,Michal Slyper,Julia Waldman,Malika Sud,Elizabeth Andrews,Gabriella Velonias,Adam L. Haber,Karthik A. Jagadeesh,Sanja Vickovic,Junmei Yao,Christine Stevens,Danielle Dionne,Lan T. Nguyen,Alexandra-Chloé Villani,Matan Hofree,Elizabeth A. Creasey,Hailiang Huang,Orit Rozenblatt-Rosen,John J. Garber,Hamed Khalili,A. Nicole Desch,Mark J. Daly,Mark J. Daly,Ashwin N. Ananthakrishnan,Alex K. Shalek,Ramnik J. Xavier,Aviv Regev,Aviv Regev +35 more
TL;DR: An atlas of 366,650 cells from the colon mucosa of 18 UC patients and 12 healthy individuals is generated, revealing 51 epithelial, stromal, and immune cell subsets, including BEST4+ enterocytes, microfold-like cells, and IL13RA2+IL11+ inflammatory fibroblasts, which are associated with resistance to anti-TNF treatment.
Journal ArticleDOI
COVID-19 tissue atlases reveal SARS-CoV-2 pathology and cellular targets.
Toni Delorey,Carly G. K. Ziegler,Graham Heimberg,Rachelly Normand,Yiming Yang,Yiming Yang,Asa Segerstolpe,Domenic Abbondanza,Stephen J. Fleming,Ayshwarya Subramanian,Daniel T. Montoro,Karthik A. Jagadeesh,Kushal K. Dey,Pritha Sen,Michal Slyper,Yered Pita-Juárez,Devan Phillips,Jana Biermann,Zohar Bloom-Ackermann,Nikolaos Barkas,Andrea Ganna,Andrea Ganna,James Gomez,Johannes C. Melms,Igor Katsyv,Erica Normandin,Erica Normandin,Pourya Naderi,Pourya Naderi,Yury Popov,Yury Popov,Siddharth S. Raju,Siddharth S. Raju,Sebastian Niezen,Sebastian Niezen,Linus T.-Y. Tsai,Katherine J. Siddle,Katherine J. Siddle,Malika Sud,Victoria M. Tran,Shamsudheen K. Vellarikkal,Shamsudheen K. Vellarikkal,Yiping Wang,Liat Amir-Zilberstein,Deepak Atri,Deepak Atri,Joseph M. Beechem,Olga R. Brook,Jonathan H. Chen,Jonathan H. Chen,Prajan Divakar,Phylicia Dorceus,Jesse M. Engreitz,Jesse M. Engreitz,Adam Essene,Donna M. Fitzgerald,Robin Fropf,Steven Gazal,Joshua Gould,John Grzyb,Tyler Harvey,Jonathan L. Hecht,Jonathan L. Hecht,Tyler Hether,Judit Jané-Valbuena,Michael Leney-Greene,Hui Ma,Hui Ma,Cristin McCabe,Daniel E. McLoughlin,Eric M. Miller,Christoph Muus,Christoph Muus,Mari Niemi,Robert F. Padera,Robert F. Padera,Robert F. Padera,Liuliu Pan,Deepti Pant,Carmel Pe’er,Jenna Pfiffner-Borges,Christopher J. Pinto,Jacob Plaisted,Jason Reeves,Marty Ross,Melissa Rudy,Erroll H. Rueckert,Michelle Siciliano,Alexander Sturm,Ellen Todres,Avinash Waghray,Sarah Warren,Shuting Zhang,Daniel R. Zollinger,Lisa A. Cosimi,Rajat M. Gupta,Rajat M. Gupta,Nir Hacohen,Nir Hacohen,Hanina Hibshoosh,Winston Hide,Alkes L. Price,Jayaraj Rajagopal,Purushothama Rao Tata,Stefan Riedel,Stefan Riedel,Gyongyi Szabo,Gyongyi Szabo,Gyongyi Szabo,Timothy L. Tickle,Patrick T. Ellinor,Deborah T. Hung,Deborah T. Hung,Pardis C. Sabeti,Richard M. Novak,Robert S. Rogers,Robert S. Rogers,Donald E. Ingber,Donald E. Ingber,Donald E. Ingber,Z. Gordon Jiang,Z. Gordon Jiang,Dejan Juric,Mehrtash Babadi,Samouil L. Farhi,Benjamin Izar,James R. Stone,Ioannis S. Vlachos,Isaac H. Solomon,Orr Ashenberg,Caroline B. M. Porter,Bo Li,Bo Li,Alex K. Shalek,Alexandra-Chloé Villani,Orit Rozenblatt-Rosen,Orit Rozenblatt-Rosen,Aviv Regev +137 more
TL;DR: In this article, single-cell analysis of lung, heart, kidney and liver autopsy samples shows the molecular and cellular changes and immune response resulting from severe SARS-CoV-2 infection.
Journal ArticleDOI
Opposing immune and genetic mechanisms shape oncogenic programs in synovial sarcoma
Livnat Jerby-Arnon,Cyril Neftel,Marni E. Shore,Marni E. Shore,Hannah R. Weisman,Hannah R. Weisman,Nathan Mathewson,Nathan Mathewson,Matthew J. McBride,Brian J. Haas,Benjamin Izar,Benjamin Izar,Angela Volorio,Angela Volorio,Gaylor Boulay,Gaylor Boulay,Luisa Cironi,Alyssa R. Richman,Alyssa R. Richman,Liliane C. Broye,Joseph M. Gurski,Christina C. Luo,Ravindra Mylvaganam,Lan Nguyen,Shaolin Mei,Johannes C. Melms,Christophe H. Georgescu,Ofir Cohen,Ofir Cohen,Jorge E. Buendia-Buendia,Asa Segerstolpe,Malika Sud,Michael S. Cuoco,Michael S. Cuoco,Danny Labes,Simon Gritsch,Simon Gritsch,Daniel R. Zollinger,Nicole Ortogero,Joseph M. Beechem,G. Petur Nielsen,Ivan Chebib,Tu Nguyen-Ngoc,Michael Montemurro,Gregory M. Cote,Edwin Choy,Igor Letovanec,Stéphane Cherix,Nikhil Wagle,Nikhil Wagle,Peter K. Sorger,Alex B. Haynes,John T. Mullen,Ivan Stamenkovic,Miguel Rivera,Miguel Rivera,Cigall Kadoch,Cigall Kadoch,Kai W. Wucherpfennig,Kai W. Wucherpfennig,Orit Rozenblatt-Rosen,Orit Rozenblatt-Rosen,Mario L. Suvà,Mario L. Suvà,Nicolo Riggi,Nicolo Riggi,Aviv Regev +66 more
TL;DR: In this article, the authors studied the cancer-immune interplay in synovial sarcoma using an integrative approach that combines single-cell RNA sequencing (scRNA-seq), spatial profiling and genetic and pharmacological perturbations.
Posted ContentDOI
A single-cell and spatial atlas of autopsy tissues reveals pathology and cellular targets of SARS-CoV-2
Toni Delorey,Carly G. K. Ziegler,Graham Heimberg,Rachelly Normand,Yiming Yang,Yiming Yang,Asa Segerstolpe,Domenic Abbondanza,Stephen J. Fleming,Ayshwarya Subramanian,Daniel T. Montoro,Karthik A. Jagadeesh,Kushal K. Dey,Pritha Sen,Michal Slyper,Yered Pita-Juárez,Devan Phillips,Zohar Bloom-Ackermann,Nick Barkas,Andrea Ganna,Andrea Ganna,James Gomez,Erica Normandin,Erica Normandin,Pourya Naderi,Pourya Naderi,Yury Popov,Yury Popov,Siddharth S. Raju,Siddharth S. Raju,Sebastian Niezen,Sebastian Niezen,Linus T.-Y. Tsai,Katherine J. Siddle,Katherine J. Siddle,Malika Sud,Victoria M. Tran,Shamsudheen K. Vellarikkal,Shamsudheen K. Vellarikkal,Liat Amir-Zilberstein,Joseph M. Beechem,Olga R. Brook,Jonathan H. Chen,Jonathan H. Chen,Prajan Divakar,Phylicia Dorceus,Jesse M. Engreitz,Jesse M. Engreitz,Adam Essene,Donna M. Fitzgerald,Robin Fropf,Steven Gazal,Joshua Gould,Tyler Harvey,Jonathan L. Hecht,Jonathan L. Hecht,Tyler Hether,Judit Jané-Valbuena,Michael Leney-Greene,Hui Ma,Hui Ma,Cristin McCabe,Daniel E. McLoughlin,Eric M. Miller,Christoph Muus,Christoph Muus,Mari Niemi,Robert F. Padera,Robert F. Padera,Robert F. Padera,Liuliu Pan,Deepti Pant,Jenna Pfiffner-Borges,Christopher J. Pinto,Jason Reeves,Marty Ross,Melissa Rudy,Erroll H. Rueckert,Michelle Siciliano,Alexander Sturm,Ellen Todres,Avinash Waghray,Sarah Warren,Shuting Zhang,Dan Zollinger,Lisa A. Cosimi,Rajat M. Gupta,Rajat M. Gupta,Nir Hacohen,Nir Hacohen,Winston Hide,Alkes L. Price,Jayaraj Rajagopal,Purushothama Rao Tata,Stefan Riedel,Stefan Riedel,Gyongyi Szabo,Gyongyi Szabo,Gyongyi Szabo,Timothy L. Tickle,Deborah T. Hung,Deborah T. Hung,Pardis C. Sabeti,Richard M. Novak,Robert S. Rogers,Robert S. Rogers,Donald E. Ingber,Donald E. Ingber,Donald E. Ingber,Z. Gordon Jiang,Z. Gordon Jiang,Dejan Juric,Mehrtash Babadi,Samouil L. Farhi,James R. Stone,Ioannis S. Vlachos,Isaac H. Solomon,Orr Ashenberg,Caroline B. M. Porter,Bo Li,Bo Li,Alex K. Shalek,Alexandra-Chloé Villani,Orit Rozenblatt-Rosen,Orit Rozenblatt-Rosen,Aviv Regev +125 more
TL;DR: In this paper, the authors used single-cell and single-nucleus RNA-Seq of lung, kidney, liver, and heart tissues collected during the clinical autopsy of 17 individuals who succumbed to the SARS-CoV-2 pandemic.
Posted ContentDOI
Rewiring of the cellular and inter-cellular landscape of the human colon during ulcerative colitis
Christopher Smillie,Moshe Biton,Moshe Biton,Jose Ordovas-Montanes,Keri M. Sullivan,Grace Burgin,Daniel B. Graham,Rebecca H. Herbst,Rebecca H. Herbst,Noga Rogel,Michal Slyper,Julia Waldman,Malika Sud,Elizabeth Andrews,Adam L. Haber,Sanja Vickovic,Danielle Dionne,Lan T. Nguyen,Alexandra-Chloé Villani,Alexandra-Chloé Villani,Matan Hofree,Elizabeth A. Creasey,Hongyan Huang,Hongyan Huang,Orit Rozenblatt-Rosen,Garber Jj,Hamed Khalili,Desch An,Desch An,Mark J. Daly,Mark J. Daly,Mark J. Daly,Ashwin N. Ananthakrishnan,Alex K. Shalek,Ramnik J. Xavier,Aviv Regev,Aviv Regev +36 more
TL;DR: An atlas of 115,517 cells from the colon mucosa of seven UC patients and ten healthy individuals is generated, revealing 51 epithelial, stromal, and immune cell subsets, including a subset of BEST4+ enterocytes, which may sense and respond to pH, and IL13RA2+IL-11+ inflammatory fibroblasts, which the authors associate with resistance to anti-TNF therapy.