M
Martijn P. van Iersel
Researcher at Maastricht University
Publications - 21
Citations - 3156
Martijn P. van Iersel is an academic researcher from Maastricht University. The author has contributed to research in topics: WikiPathways : Pathways for the people & BioPAX : Biological Pathways Exchange. The author has an hindex of 14, co-authored 21 publications receiving 2900 citations. Previous affiliations of Martijn P. van Iersel include University of Maryland, College Park.
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Journal ArticleDOI
The BioPAX community standard for pathway data sharing
Emek Demir,Emek Demir,Michael P. Cary,Suzanne M. Paley,Ken Fukuda,Christian Lemer,Imre Vastrik,Guanming Wu,Peter D'Eustachio,Carl F. Schaefer,Joanne S. Luciano,Frank Schacherer,Irma Martínez-Flores,Zhenjun Hu,Verónica Jiménez-Jacinto,Geeta Joshi-Tope,Kumaran Kandasamy,Alejandra López-Fuentes,Huaiyu Mi,Elgar Pichler,Igor Rodchenkov,Andrea Splendiani,Andrea Splendiani,Sasha Tkachev,Jeremy Zucker,Gopal R. Gopinath,Harsha Rajasimha,Harsha Rajasimha,Ranjani Ramakrishnan,Imran Shah,Mustafa H Syed,Nadia Anwar,Özgün Babur,Özgün Babur,Michael L. Blinov,Erik Brauner,Dan Corwin,Sylva L. Donaldson,Frank Gibbons,Robert N. Goldberg,Peter Hornbeck,Augustin Luna,Peter Murray-Rust,Eric K. Neumann,Oliver Reubenacker,Matthias Samwald,Matthias Samwald,Martijn P. van Iersel,Sarala M. Wimalaratne,Keith Allen,Burk Braun,Michelle Whirl-Carrillo,Kei-Hoi Cheung,Kam D. Dahlquist,Andrew Finney,Marc Gillespie,Elizabeth M. Glass,Li Gong,Robin Haw,Michael Honig,Olivier Hubaut,David W. Kane,Shiva Krupa,Martina Kutmon,Julie Leonard,Debbie Marks,David Merberg,Victoria Petri,Alexander R. Pico,Dean Ravenscroft,Liya Ren,Nigam H. Shah,Margot Sunshine,Rebecca Tang,Ryan Whaley,Stan Letovksy,Kenneth H. Buetow,Andrey Rzhetsky,Vincent Schächter,Bruno S. Sobral,Ugur Dogrusoz,Shannon K. McWeeney,Mirit I. Aladjem,Ewan Birney,Julio Collado-Vides,Susumu Goto,Michael Hucka,Nicolas Le Novère,Natalia Maltsev,Akhilesh Pandey,Paul Thomas,Edgar Wingender,Peter D. Karp,Chris Sander,Gary D. Bader +94 more
TL;DR: Thousands of interactions, organized into thousands of pathways, from many organisms are available from a growing number of databases, and this large amount of pathway data in a computable form will support visualization, analysis and biological discovery.
Journal ArticleDOI
WikiPathways: Pathway Editing for the People
Alexander R. Pico,Thomas Kelder,Martijn P. van Iersel,Kristina Hanspers,Bruce R. Conklin,Chris T. Evelo +5 more
TL;DR: WikiPathways provides a collaborative platform for creating, updating, and sharing pathway diagrams and serves as an example of content curation by the biology community.
Journal ArticleDOI
WikiPathways: building research communities on biological pathways
Thomas Kelder,Martijn P. van Iersel,Kristina Hanspers,Martina Kutmon,Bruce R. Conklin,Chris T. Evelo,Alexander R. Pico +6 more
TL;DR: To assess whether the community curation experiment can be considered successful, here the relation between use and contribution is analyzed, which gives results in line with other wiki projects.
Journal ArticleDOI
Presenting and exploring biological pathways with PathVisio
Martijn P. van Iersel,Thomas Kelder,Alexander R. Pico,Kristina Hanspers,Susan L. Coort,Bruce R. Conklin,Chris T. Evelo +6 more
TL;DR: This work presents PathVisio, a new visualization tool for biological pathways that mimics the popular GenMAPP tool with a completely new Java implementation that allows better integration with other open source projects.
Journal ArticleDOI
PathVisio 3: an extendable pathway analysis toolbox.
Martina Kutmon,Martijn P. van Iersel,Anwesha Bohler,Thomas Kelder,Nuno Nunes,Alexander R. Pico,Chris T. Evelo +6 more
TL;DR: The third version of PathVisio 3 is presented with the newest additions and improvements of the application, and introduces a new powerful extension systems that allows other developers to contribute additional functionality in form of plugins without changing the core application.