M
Michael L. Blinov
Researcher at University of Connecticut
Publications - 75
Citations - 4422
Michael L. Blinov is an academic researcher from University of Connecticut. The author has contributed to research in topics: Rule-based modeling & SBML. The author has an hindex of 27, co-authored 66 publications receiving 3962 citations. Previous affiliations of Michael L. Blinov include University of Toronto & Weizmann Institute of Science.
Papers
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Journal ArticleDOI
The BioPAX community standard for pathway data sharing
Emek Demir,Emek Demir,Michael P. Cary,Suzanne M. Paley,Ken Fukuda,Christian Lemer,Imre Vastrik,Guanming Wu,Peter D'Eustachio,Carl F. Schaefer,Joanne S. Luciano,Frank Schacherer,Irma Martínez-Flores,Zhenjun Hu,Verónica Jiménez-Jacinto,Geeta Joshi-Tope,Kumaran Kandasamy,Alejandra López-Fuentes,Huaiyu Mi,Elgar Pichler,Igor Rodchenkov,Andrea Splendiani,Andrea Splendiani,Sasha Tkachev,Jeremy Zucker,Gopal R. Gopinath,Harsha Rajasimha,Harsha Rajasimha,Ranjani Ramakrishnan,Imran Shah,Mustafa H Syed,Nadia Anwar,Özgün Babur,Özgün Babur,Michael L. Blinov,Erik Brauner,Dan Corwin,Sylva L. Donaldson,Frank Gibbons,Robert N. Goldberg,Peter Hornbeck,Augustin Luna,Peter Murray-Rust,Eric K. Neumann,Oliver Reubenacker,Matthias Samwald,Matthias Samwald,Martijn P. van Iersel,Sarala M. Wimalaratne,Keith Allen,Burk Braun,Michelle Whirl-Carrillo,Kei-Hoi Cheung,Kam D. Dahlquist,Andrew Finney,Marc Gillespie,Elizabeth M. Glass,Li Gong,Robin Haw,Michael Honig,Olivier Hubaut,David W. Kane,Shiva Krupa,Martina Kutmon,Julie Leonard,Debbie Marks,David Merberg,Victoria Petri,Alexander R. Pico,Dean Ravenscroft,Liya Ren,Nigam H. Shah,Margot Sunshine,Rebecca Tang,Ryan Whaley,Stan Letovksy,Kenneth H. Buetow,Andrey Rzhetsky,Vincent Schächter,Bruno S. Sobral,Ugur Dogrusoz,Shannon K. McWeeney,Mirit I. Aladjem,Ewan Birney,Julio Collado-Vides,Susumu Goto,Michael Hucka,Nicolas Le Novère,Natalia Maltsev,Akhilesh Pandey,Paul Thomas,Edgar Wingender,Peter D. Karp,Chris Sander,Gary D. Bader +94 more
TL;DR: Thousands of interactions, organized into thousands of pathways, from many organisms are available from a growing number of databases, and this large amount of pathway data in a computable form will support visualization, analysis and biological discovery.
Book ChapterDOI
Rule-based modeling of biochemical systems with BioNetGen.
TL;DR: This work focuses on how a rule-based model is specified in the BioNetGen language (BNGL) and how a model specification is analyzed using the Bio netGen software tool.
Journal ArticleDOI
BioNetGen: software for rule-based modeling of signal transduction based on the interactions of molecular domains
TL;DR: BioNetGen allows a user to create a computational model that characterizes the dynamics of a signal transduction system, and that accounts comprehensively and precisely for specified enzymatic activities, potential post-translational modifications and interactions of the domains of signaling molecules.
Journal ArticleDOI
Rules for Modeling Signal-Transduction Systems
William S. Hlavacek,James R. Faeder,Michael L. Blinov,Richard G. Posner,Michael Hucka,Walter Fontana +5 more
TL;DR: Approaches to creation of mathematical models of signaling systems with strategies that keep the models from being unwieldy but still allow them to accurately reflect biological systems are reviewed.
Journal ArticleDOI
Virtual cell modelling and simulation software environment
Ion I. Moraru,James C. Schaff,Boris M. Slepchenko,Michael L. Blinov,Frank Morgan,Anuradha Lakshminarayana,Fei Gao,Ye Li,Leslie M. Loew +8 more
TL;DR: The Virtual Cell is now open source, with its native model encoding language (VCML) being a public specification, which stands as the basis for a new generation of more customised, experiment-centric modelling tools using a new plug-in based platform.