K
Kam D. Dahlquist
Researcher at Loyola Marymount University
Publications - 23
Citations - 3801
Kam D. Dahlquist is an academic researcher from Loyola Marymount University. The author has contributed to research in topics: Microarray analysis techniques & BioPAX : Biological Pathways Exchange. The author has an hindex of 14, co-authored 23 publications receiving 3687 citations. Previous affiliations of Kam D. Dahlquist include Stanford University & University of California, San Francisco.
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Journal ArticleDOI
GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways.
TL;DR: A free stand-alone computer program designed for viewing and analyzing gene expression data in the context of biological pathways, GenMAPP (Gene Microarray Pathway Profiler), which complements the current pathway databases by providing a means of freely exchanging pathway-related data among investigators.
Journal ArticleDOI
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
Scott W. Doniger,Nathan Salomonis,Kam D. Dahlquist,Karen Vranizan,Karen Vranizan,Steven C. Lawlor,Bruce R. Conklin +6 more
TL;DR: GenMAPPFinder allows the user to rapidly identify GO terms with over-represented numbers of gene-expression changes, and generates GenMAPP graphical files where gene relationships can be explored, annotated, and files can be freely exchanged.
Journal ArticleDOI
The BioPAX community standard for pathway data sharing
Emek Demir,Emek Demir,Michael P. Cary,Suzanne M. Paley,Ken Fukuda,Christian Lemer,Imre Vastrik,Guanming Wu,Peter D'Eustachio,Carl F. Schaefer,Joanne S. Luciano,Frank Schacherer,Irma Martínez-Flores,Zhenjun Hu,Verónica Jiménez-Jacinto,Geeta Joshi-Tope,Kumaran Kandasamy,Alejandra López-Fuentes,Huaiyu Mi,Elgar Pichler,Igor Rodchenkov,Andrea Splendiani,Andrea Splendiani,Sasha Tkachev,Jeremy Zucker,Gopal R. Gopinath,Harsha Rajasimha,Harsha Rajasimha,Ranjani Ramakrishnan,Imran Shah,Mustafa H Syed,Nadia Anwar,Özgün Babur,Özgün Babur,Michael L. Blinov,Erik Brauner,Dan Corwin,Sylva L. Donaldson,Frank Gibbons,Robert N. Goldberg,Peter Hornbeck,Augustin Luna,Peter Murray-Rust,Eric K. Neumann,Oliver Reubenacker,Matthias Samwald,Matthias Samwald,Martijn P. van Iersel,Sarala M. Wimalaratne,Keith Allen,Burk Braun,Michelle Whirl-Carrillo,Kei-Hoi Cheung,Kam D. Dahlquist,Andrew Finney,Marc Gillespie,Elizabeth M. Glass,Li Gong,Robin Haw,Michael Honig,Olivier Hubaut,David W. Kane,Shiva Krupa,Martina Kutmon,Julie Leonard,Debbie Marks,David Merberg,Victoria Petri,Alexander R. Pico,Dean Ravenscroft,Liya Ren,Nigam H. Shah,Margot Sunshine,Rebecca Tang,Ryan Whaley,Stan Letovksy,Kenneth H. Buetow,Andrey Rzhetsky,Vincent Schächter,Bruno S. Sobral,Ugur Dogrusoz,Shannon K. McWeeney,Mirit I. Aladjem,Ewan Birney,Julio Collado-Vides,Susumu Goto,Michael Hucka,Nicolas Le Novère,Natalia Maltsev,Akhilesh Pandey,Paul Thomas,Edgar Wingender,Peter D. Karp,Chris Sander,Gary D. Bader +94 more
TL;DR: Thousands of interactions, organized into thousands of pathways, from many organisms are available from a growing number of databases, and this large amount of pathway data in a computable form will support visualization, analysis and biological discovery.
Journal ArticleDOI
GenMAPP 2: new features and resources for pathway analysis
Nathan Salomonis,Kristina Hanspers,Alexander C. Zambon,Karen Vranizan,Steven C. Lawlor,Kam D. Dahlquist,Scott W. Doniger,Joshua M. Stuart,Bruce R. Conklin,Alexander R. Pico +9 more
TL;DR: GenMAPP version 2 provides a means to rapidly interrogate complex experimental data for pathway-level changes in a diverse range of organisms and offers innovative ways to display and share data by incorporating HTML export of analyses for entire sets of pathways as organized web pages.
Journal ArticleDOI
RNA Sequence Determinants for Aminoglycoside Binding to an A-site rRNA Model Oligonucleotide
TL;DR: Oligonucleotides homologous to eukaryotic rRNA sequences show reduced binding of paromomycin, suggesting a physical origin for the species-specific action of aminoglycosides.