Pedro Furió-Tarí

TL;DR: The complete SEQC data sets, comprising >100 billion reads, provide unique resources for evaluating RNA-seq analyses for clinical and regulatory settings, and measurement performance depends on the platform and data analysis pipeline, and variation is large for transcript-level profiling.

TL;DR: It is demonstrated that the non-parametric NOISeqBIO efficiently controls false discoveries in experiments with biological replication and outperforms state-of-the-art methods.

TL;DR: PaintOmics 3 combines server-end capabilities for data analysis with the potential of modern web resources for data visualization, providing researchers with a powerful framework for interactive exploration of their multi-omics information.

TL;DR: SpongeScan is presented, a graphical web tool to compute and visualize putative MREs in lncRNAs, along with different measures to assess their likely behavior as ceRNAs.

TL;DR: Whole‐genome expression profiles were massively modulated by the rearing environment, mainly by the presence of T. terscheckii alkaloids, and this study contributes new data onto the role of transcriptional plasticity in response to alternative rearing environments.