S
Simone Duprat
Researcher at Centre national de la recherche scientifique
Publications - 12
Citations - 5052
Simone Duprat is an academic researcher from Centre national de la recherche scientifique. The author has contributed to research in topics: Genome & Gene. The author has an hindex of 11, co-authored 12 publications receiving 4855 citations. Previous affiliations of Simone Duprat include University of Évry Val d'Essonne.
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Journal ArticleDOI
Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype
Olivier Jaillon,Jean-Marc Aury,Frédéric Brunet,Jean-Louis Petit,Nicole Stange-Thomann,Evan Mauceli,Laurence Bouneau,Cécile Fischer,Catherine Ozouf-Costaz,Alain Bernot,Sophie Nicaud,David M. Jaffe,Sheila Fisher,Georges Lutfalla,Carole Dossat,Béatrice Segurens,Corinne Dasilva,Marcel Salanoubat,Michael Levy,Nathalie Boudet,Sergi Castellano,Véronique Anthouard,Claire Jubin,Vanina Castelli,Michael Katinka,Benoit Vacherie,Christian Biémont,Zineb Skalli,Laurence Cattolico,Julie Poulain,Véronique de Berardinis,Corinne Cruaud,Simone Duprat,Philippe Brottier,Jean-Pierre Coutanceau,Jérôme Gouzy,Genís Parra,Guillaume Lardier,Charles Chapple,Kevin McKernan,Paul A. McEwan,Stephanie Bosak,Manolis Kellis,Jean-Nicolas Volff,Roderic Guigó,Michael C. Zody,Jill P. Mesirov,Kerstin Lindblad-Toh,Bruce W. Birren,Chad Nusbaum,Daniel Kahn,Marc Robinson-Rechavi,Vincent Laudet,Vincent Schächter,Francis Quetier,William Saurin,Claude Scarpelli,Patrick Wincker,Eric S. Lander,Eric S. Lander,Jean Weissenbach,Hugues Roest Crollius,Hugues Roest Crollius +62 more
TL;DR: Genome analysis provides a greatly improved fish gene catalogue, including identifying key genes previously thought to be absent in fish, and reconstructs much of the evolutionary history of ancient and recent chromosome rearrangements leading to the modern human karyotype.
Journal ArticleDOI
A gene map of the human genome
Gregory D. Schuler,Mark S. Boguski,Elizabeth A. Stewart,Lincoln Stein,Gabor Gyapay,Kate Rice,Robert E. White,P. Rodriguez-Tomé,Amita Aggarwal,Eva Bajorek,S. Bentolila,B. B. Birren,Adam Butler,Andrew B. Castle,N. Chiannilkulchai,Angela M. Chu,C M Clee,Sid Cowles,P. J. R. Day,T. Dibling,N. Drouot,Ian Dunham,Simone Duprat,C. East,C A Edwards,Jun Fan,Nicole Y. Fang,Cécile Fizames,Christine Garrett,L. Green,David Hadley,Midori A. Harris,Paul Harrison,Shannon T. Brady,Andrew A. Hicks,E. Holloway,L. Hui,S. Hussain,C. Louis-Dit-Sully,J. Ma,A. MacGilvery,Christopher Mader,A. Maratukulam,Tara C. Matise,K. B. McKusick,Jean Morissette,Andrew J. Mungall,Delphine Muselet,H. C. Nusbaum,David C. Page,Ammon B. Peck,Shanti M. Perkins,Mark Piercy,Fawn Qin,John Quackenbush,S A Ranby,Tim Reif,Steve Rozen,C. Sanders,X. She,James Silva,Donna K. Slonim,Carol Soderlund,W.-L. Sun,P. Tabar,T. Thangarajah,Nathalie Vega-Czarny,Douglas Vollrath,S. Voyticky,T. E. Wilmer,Xiao-Yu Wu,Mark Raymond Adams,Charles Auffray,Nicole A.R. Walter,Rhonda Brandon,Anindya Dehejia,Peter N. Goodfellow,R. Houlgatte,James R. Hudson,Susan E. Ide,K. R. Iorio,Wha‐Young Lee,N. Seki,Takahiro Nagase,K. Ishikawa,N. Nomura,Cheryl Phillips,Mihael H. Polymeropoulos,Mina Sandusky,Karin Schmitt,Richard Berry,K. Swanson,R. Torres,J. C. Venter,James M. Sikela,Jacques S. Beckmann,Jean Weissenbach,Richard M. Myers,David R. Cox,Michael R. James,David Bentley,Panos Deloukas,Eric S. Lander,Thomas J. Hudson,Thomas J. Hudson +104 more
TL;DR: The gene map unifies the existing genetic and physical maps with the nucleotide and protein sequence databases in a fashion that should speed the discovery of genes underlying inherited human disease.
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Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
Michael Katinka,Simone Duprat,Emmanuel Cornillot,Guy Méténier,Fabienne Thomarat,Gérard Prensier,Valérie Barbe,Eric Peyretaillade,Philippe Brottier,Patrick Wincker,Frédéric Delbac,Hicham El Alaoui,Pierre Peyret,William Saurin,Manolo Gouy,Jean Weissenbach,Christian P. Vivarès +16 more
TL;DR: The DNA sequences of the 11 chromosomes of the ∼2.9-megabase (Mb) genome of Encephalitozoon cuniculi are reported and it is hypothesize that microsporidia have retained a mitochondrion-derived organelle.
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Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome
Alexis Dufresne,Marcel Salanoubat,Frédéric Partensky,François Artiguenave,Ilka M. Axmann,Valérie Barbe,Simone Duprat,Michael Y. Galperin,Eugene V. Koonin,Florence Le Gall,Kira S. Makarova,Martin Ostrowski,Sophie Oztas,Catherine Robert,Igor B. Rogozin,David J. Scanlan,Nicole Tandeau de Marsac,Jean Weissenbach,Patrick Wincker,Yuri I. Wolf,Wolfgang R. Hess +20 more
TL;DR: The genome of P. marinus SS120 is one of the two smallest genomes of a photosynthetic organism known to date and lacks many genes that are involved in photosynthesis, DNA repair, solute uptake, intermediary metabolism, motility, phototaxis, and other functions that are conserved among other cyanobacteria.
Journal ArticleDOI
Unique features revealed by the genome sequence of Acinetobacter sp. ADP1, a versatile and naturally transformation competent bacterium
Valérie Barbe,David Vallenet,Nuria Fonknechten,Annett Kreimeyer,Sophie Oztas,Laurent Labarre,Stéphane Cruveiller,Catherine Robert,Simone Duprat,Patrick Wincker,L. Nicholas Ornston,Jean Weissenbach,Philippe Marlière,Georges N. Cohen,Claudine Médigue +14 more
TL;DR: Genome analysis of the Acinetobacter ADP1 revealed genes for metabolic pathways involved in utilization of a large variety of compounds, supporting the view that the cycle itself is centrally geared to the catabolic capabilities of this exceptionally versatile organism.