T
T. K. Arun Kumar
Researcher at University of Minnesota
Publications - 25
Citations - 1814
T. K. Arun Kumar is an academic researcher from University of Minnesota. The author has contributed to research in topics: Biology & Botany. The author has an hindex of 11, co-authored 20 publications receiving 1600 citations.
Papers
More filters
Journal ArticleDOI
The paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes
Dimitrios Floudas,Manfred Binder,Robert Riley,Kerrie Barry,Robert A. Blanchette,Bernard Henrissat,Ángel T. Martínez,Robert Otillar,Joseph W. Spatafora,Jagjit S. Yadav,Andrea Aerts,Isabelle Benoit,Alexander Boyd,Alexis Carlson,Alex Copeland,Pedro M. Coutinho,Ronald P. de Vries,Patricia Ferreira,Keisha Findley,Brian Foster,Jill Gaskell,Dylan Glotzer,Paweł Górecki,Joseph Heitman,Cedar N. Hesse,Chiaki Hori,Kiyohiko Igarashi,Joel A. Jurgens,Nathan M Kallen,Phil Kersten,Annegret Kohler,Ursula Kües,T. K. Arun Kumar,Alan Kuo,Kurt LaButti,Luis F. Larrondo,Erika Lindquist,Albee Y. Ling,Vincent Lombard,Susan Lucas,Taina Lundell,Rachael Martin,David J. McLaughlin,Ingo Morgenstern,Emanuelle Morin,Claude Murat,László Nagy,Matthew J Nolan,Robin A. Ohm,Aleksandrina Patyshakuliyeva,Antonis Rokas,Francisco J. Ruiz-Dueñas,Grzegorz Sabat,Asaf Salamov,Masahiro Samejima,Jeremy Schmutz,Jason C. Slot,Franz J. St John,Jan Stenlid,Hui Sun,Sheng Sun,Khajamohiddin Syed,Adrian Tsang,Ad Wiebenga,Darcy Young,Antonio G. Pisabarro,Daniel C. Eastwood,Francis Martin,Dan Cullen,Igor V. Grigoriev,David S. Hibbett +70 more
TL;DR: Comparative analyses of 31 fungal genomes suggest that lignin-degrading peroxidases expanded in the lineage leading to the ancestor of the Agaricomycetes, which is reconstructed as a white rot species, and then contracted in parallel lineages leading to brown rot and mycorrhizal species.
Journal ArticleDOI
Resolving the phylogenetic position of the Wallemiomycetes: an enigmatic major lineage of Basidiomycota
P. Brandon Matheny,Jasmin A. GossmannJ.A. Gossmann,Polona ZalarP. Zalar,T. K. Arun Kumar,David S. Hibbett +4 more
TL;DR: The Wallemiomycetes includes three species of molds from the genus Wallemia adapted to environments of high osmotic stress, contaminate various foods, cause respiratory disease, and control fungal infections.
Journal ArticleDOI
The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction
Mahajabeen Padamsee,T. K. Arun Kumar,Robert Riley,Manfred Binder,Alexander Boyd,Ana M. Calvo,Kentaro Furukawa,Cedar N. Hesse,Stefan Hohmann,Timothy Y. James,Kurt LaButti,Alla Lapidus,Erika Lindquist,Susan Lucas,Kari Miller,Sourabha Shantappa,Igor V. Grigoriev,David S. Hibbett,David J. McLaughlin,Joseph W. Spatafora,M. Catherine Aime +20 more
TL;DR: Phylogenetic analyses of a 71-protein dataset support the position of Wallemia as the earliest diverging lineage of Agaricomycotina, which is confirmed by septal pore ultrastructure that shows the septAL pore apparatus as a variant of the Tremella-type.
Journal ArticleDOI
Considerations and consequences of allowing DNA sequence data as types of fungal taxa
Juan Carlos Zamora,Måns Svensson,Roland Kirschner,Ibai Olariaga,Svengunnar Ryman,Luis A. Parra,József Geml,Anna Rosling,Slavomír Adamčík,Teuvo Ahti,M. Catherine Aime,A. Martyn Ainsworth,László Albert,Edgardo Albertó,Alberto Altés García,Dmitry Ageev,Reinhard Agerer,Begoña Aguirre-Hudson,Joseph F. Ammirati,Harry Andersson,Claudio Angelini,Vladimír Antonín,Takayuki Aoki,André Aptroot,Didier Argaud,Blanca Imelda Arguello Sosa,Arne Aronsen,Ulf Arup,Bita Asgari,Boris Assyov,Violeta Atienza,Ditte Bandini,João Luís Baptista-Ferreira,Hans-Otto Baral,Tim Baroni,Robert W. Barreto,Henry J. Beker,Ann Bell,Jean-Michel Bellanger,Francesco Bellù,Martin Bemmann,Mika Bendiksby,Egil Bendiksen,Katriina Bendiksen,Lajos Benedek,Anna Bérešová-Guttová,Franz Berger,Reinhard Berndt,Annarosa Bernicchia,Alona Yu. Biketova,Enrico Bizio,Curtis R. Björk,Teun Boekhout,David Boertmann,Tanja Böhning,Florent Boittin,Carlos G. Boluda,Menno W. Boomsluiter,Jan Borovička,Tor Erik Brandrud,Uwe Braun,Irwin M. Brodo,Tatiana Bulyonkova,Harold H. Burdsall,Bart Buyck,Ana Rosa Burgaz,Vicent Calatayud,Philippe Callac,Emanuele Campo,Massimo Candusso,Brigitte Capoen,Joaquim Carbó,Matteo Domenico Carbone,Rafael F. Castañeda-Ruiz,Michael A. Castellano,Jie Chen,Philippe Clerc,Giovanni Consiglio,Gilles Corriol,Régis Courtecuisse,Ana Crespo,Cathy L. Cripps,Pedro W. Crous,Gladstone Alves da Silva,Meiriele da Silva,Marjo Dam,Nico Dam,Frank Dämmrich,Kanad Das,Linda Davies,Eske De Crop,André De Kesel,Ruben De Lange,Bárbara De Madrignac Bonzi,Thomas Edison E. dela Cruz,Lynn Delgat,Vincent Demoulin,Dennis E. Desjardin,Paul Diederich,Bálint Dima,Maria Martha Dios,Pradeep K. Divakar,Clovis Douanla-Meli,Brian Douglas,Elisandro Ricardo Drechsler-Santos,Paul S. Dyer,Ursula Eberhardt,Damien Ertz,Fernando Esteve-Raventós,Javier Angel Etayo Salazar,Vera Evenson,Guillaume Eyssartier,Edit Farkas,Alain Favre,Anna G. Fedosova,Mario Filippa,Péter Finy,Adam Flakus,Simón Fos,Jacques Fournier,A Fraiture,Paolo Franchi,Ana Esperanza Franco Molano,Gernot Friebes,Andreas Frisch,Alan M. Fryday,Giuliana Furci,Ricardo Galán Márquez,Matteo Garbelotto,Joaquina María García-Martín,Mónica A.G. Otálora,Dania García Sánchez,Alain Gardiennet,Sigisfredo Garnica,Isaac Garrido Benavent,Genevieve Gates,Alice Cruz Lima da Gerlach,Masoomeh Ghobad-Nejhad,Tatiana Baptista Gibertoni,Tine Grebenc,Irmgard Greilhuber,Bella Grishkan,Johannes Z. Groenewald,Martin Grube,Gérald Gruhn,Cécile Gueidan,Gro Gulden,Luís Fernando Pascholati Gusmão,Josef Hafellner,Michel Hairaud,Marek Halama,Nils Hallenberg,Roy E. Halling,Karen Hansen,Christoffer Bugge Harder,Jacob Heilmann-Clausen,Stip Helleman,Alain Henriot,Margarita Hernández-Restrepo,Raphaël Herve,Caroline Hobart,Mascha Hoffmeister,Klaus Høiland,Jan Holec,Håkon Holien,Karen W. Hughes,Vit Hubka,Seppo Huhtinen,Boris Ivančević,Marian Jagers,Walter M. Jaklitsch,AnnaElise Jansen,Ruvishika S. Jayawardena,Thomas Stjernegaard Jeppesen,Mikael Jeppson,Peter R. Johnston,Per M. Jørgensen,Ingvar Kärnefelt,L. B. Kalinina,Gintaras Kantvilas,Mitko Karadelev,Taiga Kasuya,Ivona Kautmanová,Richard W. Kerrigan,Martin Kirchmair,Anna Kiyashko,Dániel G. Knapp,Henning Knudsen,Kerry Knudsen,Tommy Knutsson,Miroslav Kolařík,Urmas Kõljalg,Alica Košuthová,Attila Koszka,Heikki Kotiranta,V. M. Kotkova,Ondřej Koukol,Jiří Kout,Gábor M. Kovács,Martin Kříž,Åsa Kruys,Viktor Kučera,Linas Kudzma,Francisco Kuhar,Martin Kukwa,T. K. Arun Kumar,Vladimír Kunca,Ivana Kušan,Thomas W. Kuyper,Carlos Lado,Thomas Læssøe,Patrice Lainé,Ewald Langer,Ellen Larsson,Karl-Henrik Larsson,Gary Laursen,Christian Lechat,Serena Lee,James C. Lendemer,Laura Noemí Levin,Uwe Lindemann,Håkan Lindström,Xingzhong Liu,Regulo Carlos Llarena Hernandez,Esteve Llop,Csaba Locsmándi,Deborah Jean Lodge,Michael Loizides,László Lőkös,J. Jennifer Luangsa-ard,Matthias Lüderitz,Thorsten Lumbsch,Matthias Lutz,Dan Mahoney,E. F. Malysheva,Vera Malysheva,Patinjareveettil Manimohan,Yasmina Marin-Felix,Guilhermina Marques,Rubén Martínez-Gil,Guy Marson,Gerardo Mata,P. Brandon Matheny,Geir Mathiassen,Neven Matočec,Helmut Mayrhofer,Mehdi Mehrabi,Ireneia Melo,Armin Mešić,Andrew S. Methven,Otto Miettinen,Ana M. Millanes Romero,Andrew N. Miller,James K. Mitchell,Roland Moberg,Pierre-Arthur Moreau,Gabriel Moreno,Olga Morozova,Asunción Morte,Lucia Muggia,Guillermo Muñoz González,Leena Myllys,István Nagy,László Nagy,Maria Alice Neves,Tuomo Niemelä,Pier Luigi Nimis,Nicolás Niveiro,Machiel E. Noordeloos,Anders Nordin,Sara R. Noumeur,Yuri K. Novozhilov,Jorinde Nuytinck,Esteri Ohenoja,Patrícia Oliveira Fiuza,Alan Orange,Alexander Ordynets,Beatriz Ortiz-Santana,Leticia Pacheco,Ferenc Pál-Fám,Melissa Palacio,Zdeněk Palice,Viktor Papp,Kadri Pärtel,Julia Pawłowska,Aurelia Paz,Ursula Peintner,Shaun R. Pennycook,Olinto Liparini Pereira,Pablo P. Daniëls,Miquel À. Pérez-De-Gregorio Capella,Carlos Manuel Pérez del Amo,Sergio P. Gorjón,Sergio Pérez-Ortega,Israel Pérez-Vargas,Brian A. Perry,Jens H. Petersen,Ronald H. Petersen,Donald H. Pfister,Chayanard Phukhamsakda,Marcin Piątek,Meike Piepenbring,Raquel Pino-Bodas,Juan Pablo Esquivel,Paul Pirot,E. S. Popov,Orlando Fabian Popoff,María Prieto Álvaro,Christian Printzen,Nadezhda V. Psurtseva,Witoon Purahong,Luis Quijada,Gerhard Rambold,Natalia A. Ramírez,Huzefa A. Raja,Olivier Raspé,Tania Raymundo,Martina Réblová,Yury A. Rebriev,Juan de Dios Reyes García,Miguel Ángel Ribes Ripoll,Franck Richard,Michael J. Richardson,Víctor J. Rico,Gerardo Lucio Robledo,Flávia Rodrigues Barbosa,Cristina Rodriguez-Caycedo,Pamela Rodriguez-Flakus,Anna Ronikier,Luis Rubio Casas,Katerina Rusevska,Günter Saar,Irja Saar,Isabel Salcedo,Sergio M. Salcedo Martínez,Carlos A. Salvador Montoya,Santiago Sánchez-Ramírez,J. Vladimir Sandoval-Sierra,Sergi Santamaria,Josiane Santana Monteiro,Hans Josef Schroers,Barbara Schulz,Geert Schmidt-Stohn,Trond Schumacher,Beatrice Senn-Irlet,Hana Ševčíková,Oleg N. Shchepin,Takashi Shirouzu,Anton Shiryaev,Klaus Siepe,Esteban Benjamin Sir,Mohammad Sohrabi,Karl Soop,Viacheslav Spirin,Toby Spribille,Marc Stadler,Joost A. Stalpers,Soili Stenroos,Ave Suija,Stellan Sunhede,Sten Svantesson,Sigvard Svensson,Tatyana Yu. Svetasheva,Krzysztof Świerkosz,Heidi Tamm,Hatira Taskin,Adrien Taudière,Jan-Olof Tedebrand,Raúl Tena Lahoz,Marina Temina,Arne Thell,Marco Thines,Göran Thor,Holger Thüs,Leif Tibell,Sanja Tibell,Einar Timdal,Zdenko Tkalčec,Tor Tønsberg,Gérard Trichies,Dagmar Triebel,Andrei Tsurykau,Rodham E. Tulloss,Veera Tuovinen,Miguel Ulloa Sosa,Carlos Urcelay,François Valade,Ricardo Valenzuela Garza,Pieter P. G. van den Boom,Nicolas Van Vooren,Aída M. Vasco-Palacios,Jukka Vauras,Juan Manuel Velasco Santos,Else C. Vellinga,Annemieke Verbeken,Per Vetlesen,Alfredo Vizzini,Hermann Voglmayr,Sergey Volobuev,Wolfgang von Brackel,Elena Voronina,Grit Walther,Roy Watling,Evi Weber,Mats Wedin,Øyvind Weholt,Martin Westberg,Eugene Yurchenko,Petr Zehnálek,Huang Zhang,Mikhail P. Zhurbenko,Stefan Ekman +411 more
TL;DR: It is concluded that the acceptance of DNA sequences alone as types of names of taxa, under the terms used in the current proposals, is unnecessary and would not solve the problem of naming putative taxa known only from DNA sequences in a scientifically defensible way.
Journal ArticleDOI
Orbilia ultrastructure, character evolution and phylogeny of Pezizomycotina
T. K. Arun Kumar,Rosanne A. Healy,Joseph W. Spatafora,Meredith Blackwell,David J. McLaughlin +4 more
TL;DR: The less differentiated nature of the spore discharge apparatus and septal pore organization supports an earliest diverging position of Orbiliomycetes within the subphylum, while the closed nuclear division and disk-shaped spindle pole body are interpreted as ancestral state characters for Ascomycota.