Showing papers by "Indonesian Institute of Sciences published in 2003"

Coral reef death during the 1997 Indian Ocean Dipole linked to Indonesian wildfires

Abstract: Geochemical anomalies and growth discontinuities in Porites corals from western Sumatra, Indonesia, record unanticipated reef mortality during anomalous Indian Ocean Dipole upwelling and a giant red tide in 1997. Sea surface temperature reconstructions show that although some past upwelling events have been stronger, there were no analogous episodes of coral mortality during the past 7000 years, indicating that the 1997 red tide was highly unusual. We show that iron fertilization by the 1997 Indonesian wildfires was sufficient to produce the extraordinary red tide, leading to reef death by asphyxiation. These findings highlight tropical wildfires as an escalating threat to coastal marine ecosystems.

Tree species differentiation in growth, recruitment and allometry in relation to maximum height in a Bornean mixed dipterocarp forest

Abstract: Summary 1 Maximum attainable height varies greatly between tree species in tropical rain forests and covaries with demographic and allometric traits. We examined these relationships in 27 abundant tree species in a mixed dipterocarp forest. These species were monitored over 3 years in two 1-ha plots in western Borneo. A 95-percentile upper height limit was used to represent maximum height, to avoid sample size differences among populations. 2 Average growth rate in trunk diameter was regressed against trunk diameter using a maximum likelihood model and assuming that growth rates were exponentially distributed around the average. Estimated average growth rate at small trunk diameters (up to 11 cm) was independent of maximum height among the 27 species, while the degree of growth reduction at larger diameters was larger for species with smaller maximum height. 3 The recruitment rate efficiency of saplings was negatively correlated with maximum height, regardless of the measure used to assess species abundance. In particular, sapling recruitment per unit basal area declined greatly with increasing maximum height, consistent with model predictions of the traits required for the stable coexistence of species at different heights within the canopy. 4 Allometric analyses showed that understorey species had shorter heights at the same trunk diameter, and deeper crowns at the same tree height, than canopy species. Therefore, understorey species showed adaptive morphology to deep shade. 5 The regressed size-dependent pattern of average growth rate and an assumption that the population was in a steady state readily explained the observed trunk diameter distributions for 21 species among 27 examined. These species, for which the projected size distribution hardly changed when the natural increase or decrease of the population was set at γ = ±0.005 year−1, had mortality rates of more than four times the value of γ.

A floristic analysis of the lowland dipterocarp forests of Borneo

Abstract: Aim To (1) identify floristic regions in the lowland (below 500 m a.s.l.) tropical dipterocarp rain forest of Borneo based on tree genera, (2) determine the characteristic taxa of these regions, (3) study tree diversity patterns within Borneo, and (4) relate the floristic and diversity patterns to abiotic factors such as mean annual rainfall and geographical distance between plots. Location Lowland tropical dipterocarp rain forest of Borneo. Methods We used tree (diameter at breast height ‡ 9.8 cm) inventory data from 28 lowland dipterocarp rain forest locations throughout Borneo. From each location six samples of 640 individuals were drawn randomly. With these data we calculated a Sorensen and Steinhaus similarity matrix for the locations. These matrices were then used in an UPGMA clustering algorithm to determine the floristic relations between the locations (dendrogram). Principal coordinate analysis was used to ordinate the locations. Characteristic taxa for the identified floristic clusters were determined with the use of the INDVAL method of Dufrene & Legendre (1997). Finally, Mantel analysis was applied to determine the influence of mean annual rainfall and geographical distance between plots on floristic composition.

Global pollution monitoring of PCBs and organochlorine pesticides using skipjack tuna as a bioindicator.

Abstract: Concentrations of organochlorines (OCs) representing persistent organic pollutants (POPs), such as polychlorinated biphenyls (PCBs), dichlorodiphenyl trichloroethane and its metabolites (DDTs), chlordane compounds (CHLs), hexachlorocyclohexane isomers (HCHs), and hexachlorobenzene (HCB), were determined in the liver of skipjack tuna (Katsuwonus pelamis) collected from the offshore waters of various regions in the world (offshore waters around Japan, Taiwan, Philippines, Indonesia, Seychelles, and Brazil, and the Japan Sea, the East China Sea, the South China Sea, the Bay of Bengal, and the North Pacific Ocean). OCs were detected in livers of all of the skipjack tuna collected from the locations surveyed, supporting the thesis that there is widespread contamination of persistent OCs in the marine environment. Within a location, no significant relationship between growth-stage (body length and weight) and OC concentrations (lipid weight basis) was observed, and the OC residue levels were rather uniform among the individuals. Interestingly, the distribution of OC concentrations in skipjack tuna was similar to those in surface seawaters from which they were taken. These results suggest that OC concentrations in skipjack tuna could reflect the pollution levels in seawater from which they are collected and that this species is a suitable bioindicator for monitoring the global distribution of OCs in offshore waters and the open ocean. Concentrations of PCBs and CHLs in skipjack tuna were higher in offshore waters around Japan (up to 1100 and 250 ng/g lipid wt, respectively), suggesting the presence of sources of PCBs and CHLs in Japan. High concentrations of DDTs and HCHs were observed in samples from the Japan Sea, the East China Sea, the South China Sea, and the Bay of Bengal (up to 1300 and 22 ng/g lipid wt, respectively). This result suggests recent use of technical DDT and HCH for agricultural and/or public health purposes in Russia, China, India, and some other developing Asian countries. Relatively high concentrations of PCBs, CHLs, HCHs, and HCB were also observed in samples collected from some locations in the middle of the Pacific Ocean, indicating the expansion of OC contamination on a global scale. Considering these facts, continuous studies monitoring these compounds in offshore waters and the open seas, using skipjack tuna as a bioindicator, are needed to further understand the future trend of contamination.

Deep topographic barriers within the Indonesian seas

Abstract: Whereas at the surface and at thermocline depth the Indonesian throughflow can weave its way between basins towards the Indian Ocean on a quasi-horizontal plane, at greater depth numerous sills are encountered, resulting in circulation patterns governed by density-driven overflow processes. Pacific water spills over deep topographic barriers into the Sulawesi Sea and into the Seram and Banda seas. The western-most throughflow path flowing through Makassar Strait encounters shallower barriers than does the eastern path. The first barrier encountered by Pacific water directed towards Makassar Strait is the 1350-m deep Sangihe Ridge, providing access to the Sulawesi Sea. The 680-m deep Dewakang Sill separating the southern Makassar Strait from the Flores Sea is a more formidable barrier. Along the eastern path, Pacific water must flow over the 1940 m barrier of the Lifamatola Passage before passing into the deep levels of the Seram and Banda Seas. The deepest barrier encountered by both the western and eastern paths to the Indian Ocean is the 1300–1450 m (perhaps as deep as 1500 m) sill of the Sunda Arc near Timor. The Savu Sea while connected to the Banda Sea down to 2000 m depth, is closed to the Indian Ocean at a depth shallower than the Timor Sill. The density-driven overflows force upwelling of resident waters within the confines of the basins, which is balanced by diapycnal mixing, resulting in an exponential deep-water temperature profile. A scale depth (Z*=Kz/w) of 420–530 m is characteristic of the 300–1500 m depth range, with values closer to 600 m for the deeper water column. The upwelled water within the confines of the Banda Sea, once over the confining sill of the Sunda Arc, may contribute 1.8–2.3 Sv the interocean throughflow.

Habitat differentiation among tree species with small-scale variation of humus depth and topography in a tropical heath forest of Central Kalimantan, Indonesia

Abstract: Small-scale spatial association of the distribution for 55 abundant tree species with two environmental factors (humus depth and surface microtopography) was examined in two 1-ha plots of a heath (kerangas) forest in Central Kalimantan, Indonesia. More than 80% of the 55 species showed a significant habitat preference in humus depth and/or relative elevation in at least one plot. In particular, ten species occurring in both plots showed a consistent significant preference for humus depth or relative elevation in the two plots. Using randomization tests, however, only five species significantly associated with humus depth and no species with relative elevation. These results suggest that edaphic and topographic factors, especially humus depth, contribute to determining local spatial distribution and floristic composition of abundant tree species in the forest.

Modal sosial: konsep dan aplikasi

Abstract: This article is aimed at explaining the development of social capital theory and its contribution in addressing social problems. Despite its first introduction in the early 20th century by Lyda Judson Hanifan the term social capital has gained prominence in social science only since its reintroduction by James Coleman in 1988 and through the subsequent work of Robert Putnam. Social capital defined by Putnam as features of social organization such as networks, trust and norms of reciprocity that facilitate cooperation for mutual benefits, has inspired many social scientists to conduct studies on the conditions of social capital in various communities in many countries. Interestingly, some of the studies have contributed to the enrichment of the social capital theory by introducing new related concepts and methods of measurement. On the practical side social capital has gained wider recognition by international aid agencies, especially the World Bank, and has been used as a powerful concept for poverty alleviation through people empowerment in many developing countries, including Indonesia.

Transformation of Cinchona alkaloids into 1-N-oxide derivatives by endophytic Xylaria sp isolated from Cinchona pubescens.

Abstract: The microbial transformation of four Cinchona alkaloids (quinine, quinidine, cinchonidine, and cinchonine) by endophytic fungi isolated from Cinchona pubescens was investigated. The endophytic filamentous fungus Xylaria sp. was found to transform the Cinchona alkaloids into their 1-N-oxide derivatives.

Indonesian medicinal plants. XXV. Cancer cell invasion inhibitory effects of chemical constituents in the parasitic plant Scurrula atropurpurea (Loranthaceae).

Abstract: Six fatty acids (1-6), two xanthines (7, 8), two flavonol glycosides (9, 10), one monoterpene glucoside (11), one lignan glycoside (12), and four flavanes (13-16) were clarified by a bioassay-guided separation as chemical constituents of Scurrula atropurpurea (Loranthaceae), a parasitic plant of the tea plant Thea sinensis (Theaceae) Among these constituents, it was found that the alkynic fatty acid octadeca-8,10,12-triynoic acid (6) exhibits a more potent inhibitory effect on cancer cell invasion in vitro than flavanes [(+)-catechin (13), (-)-epicatechin (14), (-)-epicatechin-3-O-gallate (15) and (-)-epigallocatechin-3-O-gallate (16)]

Phenolic constituents of Gnetum klossii.

Abstract: Four new phenolic derivatives, gnetofurans A−C (1−3) and dihydropinosylvindiol (4), were isolated from a methanol-soluble extract of the stems of Gnetum klossii, together with nine known compounds [gnetifolin F (5), isorhapontigenin, gnetulin, gnetins E and C, latifolol, gnetol, (−)-e-viniferin, and trans-resveratrol]. The structures of the new compounds were determined by spectral data analysis.

Kemiskinan dalam masyarakat nelayan

Abstract: Most fishermen live in poverty. They manifest in several dimensions: economic, social culture and politic. It also cover both family poverty and physical infrastructure. Many factors affected fishermen poverty. The first is their traditional gear, and the second is their dependence upon tengkulak (fish trader). In some cases, the existence of TPI (Fish Auction Place) contributes to impoverish them. For labour, this condition especially for labour fishermen make their life more difficult, because of unjustice producion sharingt. To increase their income, developing fishing gear capacity is a necessity. Their dependence upon tengkulak should also be minimized to develop fishermen bargaining position. It is also supported by restructuration of share product system, to be more favorable to labours. It is important to make fishermen as a subject in development. It means that they should be invited to discuss their problem, as well as solutions based on their aspiratio, because development is not only in economic terms, but how to make the poor to be more human.

Infrared spectroscopic investigations of weathering effects on the surface of tropical wood

Abstract: Two Fourier transform infrared spectroscopic techniques, photoacoustic and diffuse reflectance spectroscopy, were utilized to explore the physical and chemical changes in wood caused by weathering. Five tropical wood species (albizia, kapur, mahoni, nangka, puspa) were exposed to natural weathering for various periods. The contents of extracts, phenolics, and Klason lignin in unexposed samples of these wood species were determined by chemical analysis. Infrared spectra of the weathered surfaces were recorded by the two techniques. The photoacoustic spectra exhibited rapid decomposition and elusion of wood constituents containing benzene rings in the region closest to the exposed surface. Line maps of infrared spectra in the vertical direction obtained by diffuse reflectance infrared microspectroscopy were consistent with the view that the additive effects of water and ultraviolet irradiation play an important role in destroying the lignin-hemicellulose matrix of the cell wall. The infrared spectroscopic techniques are available for the analysis of weathered wood.

Isozyme and RAPD variation among Phytophthora colocasiae isolates from South-east Asia and the Pacific

Abstract: Isozyme variation was studied in 94 isolates of Phytophthora colocasiae originating from Indonesia, Papua New Guinea, the Philippines, Thailand and Vietnam. Eight polymorphic enzyme systems (HK, PGM, PGI, Gluco, MDH, ICD, 6PDH, ME) revealed 52 isozyme patterns (zymotypes), each uniquely characterized by the presence or absence of 60 electromorphs. A core sample of 20 isolates was subsequently analysed with RAPD markers. Seven primers were used successfully and all profiles were reproducible. Clear bands were revealed and, in some cases, allowed differentiation between isolates exhibiting identical zymotypes. Results indicate that throughout this vast geographic region, taro leaf blight is caused by numerous and distinct strains that are genetically variable. Variation occurs within and between countries. The geographical distribution of zymotypes shows that none is common to two different countries. Although the differences in pathogenicity are not yet established, different P. colocasiae genotypes are likely to recombine and evolve rapidly as this species is heterothallic. From these results, a long-term breeding strategy is recommended for taro (Colocasia esculenta) based on recurrent selection using a wide genetic base composed of carefully selected parents from diverse geographic origins to maximize multigenic resistance in progenies.

A tree species inventory in a one-hectare plot at the batang gadis national park, north sumatra, indonesia

Abstract: KARTAWINATA, KUSWATA; SAMSOEDIN, ISMAYADI; HERIYANTO, M. AND AFRIASTINI, J. J. 2004. A tree species inventory in a one-hectare plot at the Batang Gadis National Park, North Sumatra, Indonesia. Reinwardtia 12 (2): 145 – 157. The results of the inventory of trees with DBH = 10 cm shows that 184 species in 41 families, represented by 583 individuals with the total basal areas of 40.56 m² occurred in the one-hectare plot sampled. Together with the saplings and shrubs the number of species was 240 belonging to 47 families. The forest is richer in tree species than other lowland forests in North Sumatra, but poorer than those in Borneo and the Malay Peninsula. Dipterocarps constituted 18.42 % of total species with basal area of 18.99 m² or 46.82 % of the total basal area in the plot. The most prominent species was Shorea gibbosa. Hopea nigra, reported to be rare in Bangka and Belitung, occurred here as one of the ten leading species. The species-area curve shows that a considerable number of additional species was encountered more or less steadily up to one hectare and there was no indication of levelling off. A simulated profile diagram shows the forest may be stratified into five layers: (1) emergent layer, (2) upper canopy, (3) middle canopy, (4) lower canopy and (5) ground canopy. Dipterocarps were leading species in the emergent layer, upper canopy and middle canopy. Only 82 species were regenerating as represented by their presence in the sapling stage ranging from 5 to 50 plants/hectare. Macaranga lowii King ex Hook. f. dominated the section which seemed to be previously occupied by gaps.

The Leiognathus aureus complex (Perciformes: Leiognathidae) with the description of a new species

Abstract: Taxonomic analysis of a group of morphologically similar ponyfishes (Perciformes: Leiognathidae) establishes a complex comprising three valid species: Leiognathus aureus Abe and Haneda, 1972, widely distributed in the western Pacific Ocean (Taiwan, Philippines, Thailand, Singapore, Indonesia, and northern Australia); L. hataii Abe and Haneda, 1972, currently known only from Ambon, Indonesia; and L. panayensis sp. nov. Kimura and Dunlap, currently known only from Panay Island, the Philippines. The L. aureus complex can be defined by the following combination of characters: mouth protruding forward, not downward; small but sharp conical teeth uniserially on jaws; a black line between lower margin of eye and lower jaw articulation; and lateral line incomplete, ending below posterior part of dorsal fin base or on anterior caudal peduncle. Leiognathus hataii differs from both L. aureus and L. panayensis in having a large dark blotch below the spinous dorsal fin base and fewer counts of scales (lateral line scales 50–58 vs. 64–85 in the latter two species; scales above lateral line 7–10 vs. 12–18; scales below lateral line 22–26 vs. 30–41). Leiognathus panayensis is distinguished from L. aureus in having a deeper body (41–51% SL vs. 35–45% SL in the latter), long posterior limb of maxilla (21–25% HL vs. 15–23% HL), wholly scaled belly (vs. naked along preanal median keel), and a dark blotch on nape (vs. absent).

Bioactive prenylated flavonoids from the stem bark of Artocarpus kemando.

Abstract: Four known prenylated flavonoids, artonins E (1) and O (2), artobiloxanthone (3), and cycloartobiloxanthone (4), were isolated from the stem bark ofArtocarpus kemando by bioassayguided fractionation using the DNA strand-scission and the KB cytotoxicity assays as monitors. Compounds1 and3 exhibited strong DNA strand-scission activity, and all four compounds were found to be cytotoxic.

Artificial nest and seed predation experiments on tropical southeast Asian islands

Abstract: Southeast Asia is rapidly losing native habitats and the consequences of this are poorly understood. Because habitat loss and disturbance can affect avian and seed survivorship, we conducted artificial nest and seed predation experiments on tropical southeast Asian islands. Data among islands and fragments or different forest types (e.g. primary versus exotic forest) within the islands are compared. On Singapore Island, predation among different forest types (primary, secondary and woodland) did not differ. Only at one of the sites, nest predation was higher at 75 m from the forest edge than at 25 m. In other sites, predation did not differ in relation to the distance from the forest edge. Predation among 10 small (0.8–1026 ha) Singaporean islands differed. However, none of the environmental variables (e.g. island area) could explain the predation differences. The lowest predation of both nests and seeds was recorded in the primary forest areas of a contiguous forest (25 500 ha) in central Java (Linggoasri). Small mammals were the main predators on Singapore and other surrounding islands. However, the index of potential predator abundance, overall, did not correlate with predation. While larger and more pristine forests may be better for avian and seed survivorship, pinpointing variables affecting both artificial nest and seed predation may be difficult.

Dynamics and age of formation of the Seram-Ambon ophiolites (Central Indonesia)

Abstract: The Seram-Ambon ophiolitic series comprise peridotites, websterites, gabbros and lavas. Petro-geochemical data show that the peridotites are weakly depleted rocks, except for the rare Cpx-free harzburgites. They underwent a sub-solidus metamorphic re-equilibration in the plagioclase field. The associated websterites and gabbros display va- rious chemical features, allowing to define 3 types of websterites and 2 groups of gabbros. They have mostly BAB cha- racteristics (presence of negative anomalies in Nb, Zr, Ti and Y), except the group 2 gabbros which have N-MORB features and the type 3 websterites which bear adakitic affinities. Lavas also display a variety of compositions, including high-Mg IAT and Mg-rich BABB with sub-alkaline affinities. Both IAT and BABB display high Th/Nb ratios which support an origin close to a continental crust environment. Our 20 to 15 Ma 40 K/ 40 Ar ages calculated for the BABB and 15-9 Ma for the IAT show that the basin and arc formed in a very short span of time, before their obduction 9-7 Ma ago (Linthout et al., 1997). Considering the paleogeographic situation in the Miocene (Haile, 1979 ; Haile, 1981) and our data, we propose that the Seram-Ambon ophiolites formed during the early Miocene in a small, short-lived (10 Ma), transtensive basin bordered on its east by an active margin and on its western part by a passive continental margin over which it was later obducted towards the SW direction.

Javanese species of the mite genus Macrocheles (Arachnida: Acari: Gamasina: Macrochelidae).

Abstract: Twelve mite species of the genus Macrocheles (Acari: Macrochelidae) were collected from the body surface of dung beetles in Java, Indonesia. Of these, three species, i.e., Macrocheles jabarensis, M. jonggolensis, and M. sukabumiensis, were described as new to science. Female of M. dispar was redescribed. Two species, i.e., M. baliensis and M. sukaramiensis, were recorded from Java for the first time. The occurrence of five species previously recorded from Java, i.e., M. hallidayi, M. kraepelini, M. limue, M. oigru, and M. merdarius, were reconfirmed. Taxonomic status of M. sp. aff. glaber was not settled in the present study, because we could not obtain the male and immatures which are indispensable for exact identification. In total 15 species of the genus Macrocheles, including 3 species already recorded but not collected in this research (M. crispa, M. krantzi, and M. subbadius), are known from Java up to date.

A New Dimeric Stilbenoid with a Five-Membered Lactone Ring from Shorea hemsleyana

Abstract: From the stem bark of Shorea hemsleyana, a new dimeric stilbenoid with a five-membered lactone ring, shorealactone (1) was isolated. The absolute configuration was determined by means of 2D NMR techniques and X-ray crystal-structure analysis of its 4-bromobenzoyl derivative 1e by means of anomalous scattering of the Br-atom.