Showing papers by "National Marine Fisheries Service published in 2005"

A review of catch-and-release angling mortality with implications for no-take reserves

Abstract: Management agencies have increasingly relied on size limits, daily bag or trip limits, quotas, and seasonal closures to manage fishing in recreational and commercial fisheries. Another trend is to establish aquatic protected areas, including no-take reserves (NTRs), to promote sustainable fisheries and protect aquatic ecosystems. Some anglers, assuming that no serious harm befalls the fish, advocate allowing catch-and-release (C&R) angling in aquatic protected areas. The ultimate success of these regulations and C&R angling depends on ensuring high release survival rates by minimizing injury and mortality. To evaluate the potential effectiveness of these practices, we review trends in C&R fishing and factors that influence release mortality. Analysis of Marine Recreational Fishery Statistic Survey (MRFSS) data for 1981–1999 showed no statistically significant U.S. trends for total number of anglers (mean 7.7 × 106), total catch in numbers (mean 362 × 106), or total annual catch/angler (mean 42.6 fish). However, mean total annual landings declined 28% (188.5 to 135.7 × 106), mean total catch/angler/trip declined 22.1% (0.95 to 0.74 fish), and mean landings/angler/trip declined 27% (0.42 to 0.31 fish). The total number of recreational releases or discards increased 97.1% (98.0 to 193.2 × 106) and as a proportion of total catch from 34.2% in 1981 to 58.0% in 1999. Evidence indicates that the increased releases and discards are primarily in response to mandatory regulations and to a lesser extent, voluntary releases. Total annual catch and mean annual catch/angler were maintained despite declines in catch per trip because anglers took 30.8% more fishing trips (43.5 to 56.9 × 106), perhaps to compensate for greater use of bag and size limits. We reviewed 53 release mortality studies, doubling the number of estimates since Muoneke and Childress (1994) reviewed catch and release fishing. A meta-analysis of combined data (n=274) showed a skewed distribution of release mortality (median 11%, mean 18%, range 0–95%). Mortality distributions were similar for salmonids, marine, and freshwater species. Mean mortality varied greatly by species and within species, anatomical hooking location was the most important mortality factor. Other significant mortality factors were: use of natural bait, removing hooks from deeply hooked fish, use of J-hooks (vs. circle hooks), deeper depth of capture, warm water temperatures, and extended playing and handling times. Barbed hooks had marginally higher mortality than barbless hooks. Based on numbers of estimates, no statistically significant overall effects were found for fish size, hook size, venting to deflate fish caught at depth, or use of treble vs. single hooks. Catch and release fishing is a growing and an increasingly important activity. The common occurrence of release mortality, however, requires careful evaluation for achieving fishery management goals and in some cases, disturbance, injury, or mortality may conflict with some goals of NTRs. Research is needed to develop better technology and techniques to reduce release mortality, to assess mortality from predation during capture and after release, to determine cumulative mortality from multiple hooking and release events, and to measure sub-lethal effects on behavior, physical condition, growth, and reproduction.

Atlantic bluefin tuna: population dynamics, ecology, fisheries and management

Abstract: Both old and new information on the biology and ecology of Atlantic bluefin tuna have confronted scientists with research challenges: research needs to be connected to current stock- assessment and management issues. We review recent studies on habitat, migrations and population structure, stressing the importance of electronic tagging results in the modification of our perception of bluefin tuna population dynamics and behaviour. Additionally, we question, from both scientific and management perspectives, the usefulness of the classical stock concept and suggest other approaches, such as Clark's contingent and metapopulation theories. Current biological information confirms that a substantial amount of uncertainty still exists in the understanding of reproduction and growth. In particular, we focus on intriguing issues such as the difference in age-at-maturity between West Atlantic and Mediterranean bluefin tuna. Our description of Atlantic bluefin tuna fisheries places today's fishing patterns within the two millennium history of exploitation of this species: we discuss trap fisheries that existed between the 17th and the early 20th centuries; Atlantic fisheries during the 1950s and 1960s; and the consequences of the recent development of the sushi-sashimi market. Finally, we evaluate stock status and management issues since the early 1970s. While important uncertainties remain, when the fisheries history is confronted with evidence from biological and stock-assessment studies, results indicate that Atlantic bluefin tuna has been undergoing heavy overfishing for a decade. We conclude that the current exploitation of bluefin tuna has many biological and economic traits that have led several fish stocks to extreme depletion in the past.

Effort distribution and catch patterns adjacent to temperate MPAs

Abstract: trawl effort (1991e1993) occurred within the 22 000 km 2 of area that would eventually be closed year-round. In 2001e2003 about 10% of effort targeting groundfish was deployed within 1 km of the marine protected area (MPA) boundaries, and about 25% within 5 km. Density gradients, consistent with spill-over from MPAs, were apparent for some species. Average revenue per hour trawled was about twice as high within 4 km of the boundary, than for more distant catches, but the catch variability was greater nearer closed area boundaries. Seasonal closed areas attracted more fishing effort after opening than prior to closure even while average cpue was the same or lower. Spatial resolution of traditional data sources (e.g., logbooks) was too crude to discern detailed MPA-related effects, as revealed by high-resolution vessel positions from VMS and catch data obtained by observers.

Regionally isolated populations of an imperiled Caribbean coral, Acropora palmata.

Abstract: The movements of larvae between marine populations are difficult to follow directly and have been the subject of much controversy, especially in the Caribbean. The debate centres on the degree to which populations are demographically open, such that depleted populations can be replenished by recruitment from distant healthy populations, or demographically closed and thus in need of local management. Given the depressed state of many tropical reef populations, the understanding of these movements now bears critically on the number, placement, and size of marine reserves. Most genetic analyses assume that dispersal patterns have been stable for thousands of generations, thus they commonly reflect past colonization histories more than ongoing dispersal. Recently developed multilocus genotyping approaches, however, have the demonstrated ability to detect both migration and population isolation over far shorter timescales. Previously, we developed five microsatellite markers and demonstrated them to be both Mendelian and coral-specific. Using these markers and Bayesian analyses, we show here that populations of the imperiled reef-building coral, Acropora palmata, have experienced little or no recent genetic exchange between the western and the eastern Caribbean. Puerto Rico is identified as an area of mixing between the two subregions. As a consequence of this regional isolation, populations in the western and eastern Caribbean should have the potential to adapt to local conditions and will require population-specific management strategies.

Quantifying the extinction vortex

Abstract: We developed a database of 10 wild vertebrate populations whose declines to extinction were monitored over at least 12 years. We quantitatively characterized the final declines of these well-monitored populations and tested key theoretical predictions about the process of extinction, obtaining two primary results. First, we found evidence of logarithmic scaling of time-to-extinction as a function of population size for each of the 10 populations. Second, two lines of evidence suggested that these extinction-bound populations collectively exhibited dynamics akin to those theoretically proposed to occur in extinction vortices. Specifically, retrospective analyses suggested that a population size of n individuals within a decade of extinction was somehow less valuable to persistence than the same population size was earlier. Likewise, both year-to-year rates of decline and year-to-year variability increased as the time-to-extinction decreased. Together, these results provide key empirical insights into extinction dynamics, an important topic that has received extensive theoretical attention.

Sodium channel mutation leading to saxitoxin resistance in clams increases risk of PSP

Abstract: Bivalve molluscs, the primary vectors of paralytic shellfish poisoning (PSP) in humans, show marked inter-species variation in their capacity to accumulate PSP toxins (PSTs)1 which has a neural basis2,3. PSTs cause human fatalities by blocking sodium conductance in nerve fibres4,5. Here we identify a molecular basis for inter-population variation in PSP resistance within a species, consistent with genetic adaptation to PSTs. Softshell clams (Mya arenaria) from areas exposed to ‘red tides’ are more resistant to PSTs, as demonstrated by whole-nerve assays, and accumulate toxins at greater rates than sensitive clams from unexposed areas. PSTs lead to selective mortality of sensitive clams. Resistance is caused by natural mutation of a single amino acid residue, which causes a 1,000-fold decrease in affinity at the saxitoxin-binding site in the sodium channel pore of resistant, but not sensitive, clams. Thus PSTs might act as potent natural selection agents, leading to greater toxin resistance in clam populations and increased risk of PSP in humans. Furthermore, global expansion of PSP to previously unaffected coastal areas6 might result in long-term changes to communities and ecosystems.

Translating ecosystem indicators into decision criteria

Abstract: Defining and attaining suitable management goals probably represent the most difficult part of ecosystem-based fisheries management. To achieve those goals we ultimately need to define ecosystem overfishing in a way that is analogous to the concept used in single-species management. Ecosystem-based control rules can then be formulated when various ecosystem indicators are evaluated with respect to fishing-induced changes. However, these multi-attribute control rules will be less straightforward than those applied typically in single-species management, and may represent a gradient rather than binary decision criteria. Some ecosystem-based decision criteria are suggested, based on indicators empirically derived from the Georges Bank, Gulf of Maine ecosystem. Further development in the translation of ecosystem indicators into decision criteria is one of the major areas for progress in fisheries science and management.

A Critical Review of Twenty Years' Use of the Resource-Ratio Theory

Abstract: A model of species interactions based on their use of shared resources was proposed in 1972 by Robert MacArthur and later expanded in an article (1980) and a book (1982) by David Tilman. This "resource-ratio theory" has been used to make a num- ber of testable predictions about competition and community pat- terns. We reviewed 1,333 papers that cite Tilman's two publications to determine whether predictions of the resource-ratio theory have been adequately tested and to summarize their general conclusions. Most of the citations do not directly test the theory: only 26 studies provide well-designed tests of one or more predictions, resulting in 42 individual tests of predictions. Most of these tests were conducted in the laboratory or experimental microcosms and used primary producers in freshwater systems. Overall, the predictions of the resource-ratio theory were supported 75% of the time. One of the primary predictions of the model, that species dominance varies with ∗ .

Comparative thresholds for acetylcholinesterase inhibition and behavioral impairment in coho salmon exposed to chlorpyrifos.

Abstract: Chlorpyrifos is a common organophosphate insecticide that has been widely detected in surface waters that provide habitat for Pacific salmon in the western United States. Although chlorpyrifos is known to inhibit acetylcholinesterase (AChE) in the brain and muscle of salmonids, the relationship between sublethal AChE inhibition and more integrative indicators of neuro-behavioral impairment are poorly understood. This is particularly true for exposures that reflect the typical range of pesticide concentrations in the aquatic environment. To directly compare the effects of chlorpyrifos on AChE activity and salmon behavior, we exposed juvenile coho salmon (Oncorhynchus kisutch) to chlorpyrifos (0-2.5 microg/L) for 96 h. A computer-assisted, three-dimensional video imaging system was used to measure spontaneous swimming and feeding behaviors in control and chlorpyrifos-exposed fish. After the behavioral trials, brain and muscle tissues were collected and analyzed for AChE activity. Chlorpyrifos inhibited tissue AChE activity and all behaviors in a dose-dependent manner. Moreover, brain AChE inhibition and reductions in spontaneous swimming and feeding activity were significantly correlated. Benchmark concentrations for sublethal neurotoxicity (statistical departure values) were <0.5 microg/L and were similar for both neurochemical and behavioral endpoints. Collectively, these results indicate a close relationship between brain AChE inhibition and behavioral impairment in juvenile coho exposed to chlorpyrifos at environmentally realistic concentrations.

Satellite tagging and cardiac physiology reveal niche expansion in salmon sharks.

Abstract: Shark populations are declining globally, yet the movements and habitats of most species are unknown. We used a satellite tag attached to the dorsal fin to track salmon sharks (Lamna ditropis) for up to 3.2 years. Here we show that salmon sharks have a subarctic-to-subtropical niche, ranging from 2 degrees to 24 degrees C, and they spend winter periods in waters as cold as 2 degrees to 8 degrees C. Functional assays and protein gels reveal that the expression of excitation-contraction coupling proteins is enhanced in salmon shark hearts, which may underlie the shark's ability to maintain heart function at cold temperatures and their niche expansion into subarctic seas.

Is the collapse of shark populations in the Northwest Atlantic Ocean and Gulf of Mexico real

Abstract: Increasing fishing pressure on sharks stocks over recent decades has resulted in declines of many populations and led to increasing concerns for their conservation. The extent of these declines, however, has been highly variable—the result of the level of fishing, ocean conditions, and the life history of individual species. Two recent articles have described the collapse and possible extirpation of shark populations in the northwest Atlantic Ocean and Gulf of Mexico. Herein, we examine the results of these two papers commenting on the data sets used, comparing them to other available data sets, and critically evaluating the analyses and conclusions. We argue that these conclusions have been overstated because: (1) the analyses were based on a limited number of data sets, (2) the data sets themselves are inadequate to describe the status of all shark populations in the northwest Atlantic Ocean and Gulf of Mexico reported in these studies, (3) available data sets that could produce different concl...

Mitochondrial and nuclear DNA analyses reveal fine scale geographic structure in bottlenose dolphins (Tursiops truncatus) in the Gulf of Mexico

Abstract: There is a need for biological information to support current stock designations of bottlenose dolphins (Tursiops truncatus) in the Gulf of Mexico. The existence of many inshore, resident “communities” raises questions as to the relationship these dolphins may hold with dolphins inhabiting neighboring inshore and coastal areas. In this study, population subdivision was examined among four resident, inshore bottlenose dolphin stocks (Sarasota Bay, FL, Tampa Bay, FL, Charlotte Harbor, FL and Matagorda Bay, TX) and one coastal stock (1–12 km offshore) in the Gulf of Mexico. Evidence of significant population structure among all areas was found on the basis of both mitochondrial DNA (mtDNA) control region sequence data and nine nuclear microsatellite loci. Estimates of relatedness showed no population contained a significantly high number of related individuals, while separate AMOVAs for males and females indicated that both sexes exhibit a significant level of site philopatry. Results presented here provide the first genetic evidence of population subdivision between the coastal Gulf of Mexico and adjacent inshore areas along the central west coast of Florida. Such strong genetic subdivision is surprising given the short geographical distance between many of these areas and the lack of obvious geographic barriers to prevent gene flow. These findings support the current, separate identification of stocks for bottlenose dolphins inhabiting the eastern coastal and inshore areas of the Gulf of Mexico.

Fishing gear involved in entanglements of right and humpback whales

Abstract: Interactions between marine mammals and fishing gear are an issue of global concern. Entanglements in the western North Atlantic are a major source of injury and mortality for endangered large whales. In this study, entanglements of 31 right whales (Eubalaena glacialis) and 30 humpback whales (Megaptera novaeangliae) were analyzed to determine the types and parts of gear involved. When gear was identified, 89% (n= 32) of the entanglements were attributed to pot and gill net gear; however, a wide range of specific gear types were implicated. Despite gear recovery, gear type was not identified in 20% (n= 9) of the cases. Although pot gear was recovered from both species equally, gill net gear was less frequently retrieved from right whales (n= 2) than humpback whales (n= 11). When gear part was identified, 81% (n= 21) involved entanglements in buoy line and/or groundline. For right whales, the most common point of gear attachment was the mouth (77.4%); for humpback whales, the tail (53%) and the mouth (43%) were common attachment sites. Four right and three humpback whales in this sample were known to have died subsequent to entanglement. However, when identified, the gear types and parts involved in lethal cases were not substantially different from entanglements with non-lethal outcomes. Large whales can become entangled in a wide variety of fishing gear types and parts, and additional insight will depend on continued efforts to document entanglements and recover associated gear.

A Vibrio vulnificus type IV pilin contributes to biofilm formation, adherence to epithelial cells, and virulence.

Abstract: Vibrio vulnificus expresses a multitude of cell-associated and secreted factors that potentially contribute to pathogenicity, although the specific roles of most of these factors have been difficult to define. Previously we have shown that a mutation in pilD (originally designated vvpD), which encodes a type IV prepilin peptidase/N-methyltransferase, abolishes expression of surface pili, suggesting that they belong to the type IV class. In addition, a pilD mutant exhibits reduced adherence to HEp-2 cells, a block in secretion of several exoenzymes that follow the type II secretion pathway, and decreased virulence. In this study, we have cloned and characterized a V. vulnificus type IV pilin (PilA) that shares extensive homology to group A type IV pilins expressed by many pathogens, including Vibrio cholerae (PilA), Pseudomonas aeruginosa (PilA), and Aeromonas hydrophila (TapA). The V. vulnificus pilA gene is part of an operon and is clustered with three other pilus biogenesis genes, pilBCD. Inactivation of pilA reduces the ability of V. vulnificus to form biofilms and significantly decreases adherence to HEp-2 cells and virulence in iron dextran-treated mice. Southern blot analysis demonstrates the widespread presence of both pilA and pilD in clinical as well as environmental strains of V. vulnificus.

Habitat triage for exploited fishes: Can we identify essential “Essential Fish Habitat?”

Abstract: There is little doubt that estuarine habitat is important for some exploited fish species, at some times, and in some places. However, it is also clear that we do not have enough resources to conserve or restore all estuarine habitat. Consequently, a simple, quantitative and transparent approach to prioritizing estuarine habitat management is required. Here, we present a general framework for identifying critical habitats of exploited fishes. Our approach requires three basic steps: (1) develop stage-structured models and identify sensitive life history stages; (2) determine what habitats, if any, are important to these stages; and (3) identify sites in which high densities of critical life stages occur in important habitat. We will illustrate the utility of this approach using red drum, Sciaenops ocellatus. Results of a simulation-based sensitivity analysis of a stage-structured matrix model show that most of the variability in population growth rate (l) of red drum is explained by larval and juvenile survival rates. Thus, this approach indicates that larval/juvenile red drum habitat should be given higher priority for conservation and/or restoration than habitats used by other life history stages. To illustrate the potential importance of juvenile habitat to red drum, we modeled the growth of a hypothetical red drum population using different population matrices as manifestations of varying habitat conditions. These numerical experiments revealed that restoration of both marsh and seagrass habitats would yield a ca. 24% increase in post-settlement survival and would result in a ca. 2% increase in ldan increase sufficient to stem a long-term population decline. Our results illustrate that protection of fish habitat depends not only on protecting sites where fish occur but also on protecting the ecological processes that allow populations to expand. Quantitative and synthetic analyses of ecological data are a first step in this direction. 2005 Elsevier Ltd. All rights reserved.

Hatchery Reform in Washington State

Abstract: Hatcheries support nearly all major fisheries for Pacific salmon (Oncorhynchus spp.) and steel-head (anadromous O. mykiss) in the Pacific Northwest. However, hatcheries have been a major source of controversy for over 30 years. The Hatchery Scientific Review Group (HSRG) was tasked by Congress to identify solutions to well-known problems so hatcheries could better meet their goals of supporting sustainable fisheries and assisting with the conservation of natural populations. We reviewed over 100 facilities and 200 programs and identified three principles of hatchery reform: (1) goals for each program must be explicitly stated in terms of desired benefits and purposes; (2) programs must be scientifically defensible; and (3) hatchery programs must respond adaptively to new information. We also identified several emerging issues critical to the success of hatcheries. We concluded that hatcheries must operate in new modes with increased scientific oversight and that they cannot meet their goals witho...

Regime, phase and paradigm shifts: making community ecology the basic science for fisheries

Abstract: Modern fishery science, which began in 1957 with Beverton and Holt, is ca. 50 years old. At its inception, fishery science was limited by a nineteenth century mechanistic worldview and by computational technology; thus, the relatively simple equations of population ecology became the fundamental ecological science underlying fisheries. The time has come for this to change and for community ecology to become the fundamental ecological science underlying fisheries. This point will be illustrated with two examples. First, when viewed from a community perspective, excess production must be considered in the context of biomass left for predators. We argue that this is a better measure of the effects of fisheries than spawning biomass per recruit. Second, we shall analyse a simple, but still multi-species, model for fishery management that considers the alternatives of harvest regulations, inshore marine protected areas and offshore marine protected areas. Population or community perspectives lead to very different predictions about the efficacy of reserves.

Principles and approaches to abate seabird by-catch in longline fisheries

Abstract: Mortality in longline fisheries is a critical global threat to most albatross and large petrel species. Here we identify key principles and approaches to identify and achieve broad use of effective seabird by-catch avoidance methods. Despite the availability of highly effective and cost-saving seabird avoidance methods, few longline fleets employ them. Given the political context and capacity of management authorities of the majority of longline fisheries, it is critical to identify seabird avoidance strategies that are not only highly effective, but are also economically viable and commercially practical. Adoption of an international performance standard for longline baited hook‐sink rate, and prescribing minimum gear weighting designs that meet this standard that are achievable by all longline fisheries, would be an important step forward towards resolving low use of seabird avoidance methods by vessels, including those in illegal, unregulated and unreported fisheries. Due to differences between fleets, no single seabird avoidance measure is likely to be effective and practical in all longline fisheries. Therefore, testing of seabird avoidance methods in individual fleets is needed to determine efficacy and economic viability. Longline fishers should directly participate in these trials as they have a large repository of knowledge and skills to effectively develop and improve seabird by-catch avoidance techniques, and this provides industry with a sense of ownership for uptake of effective by-catch reduction methods. Establishing protected areas containing seabird colonies and adjacent waters within a nation’s EEZ can be an expedient method to address seabird by-catch. However, establishing high seas marine protected areas to restrict longline fishing in seabird foraging areas, which would require extensive and dynamic boundaries and large buffer zones, may not be a viable short-term solution because of the extensive time anticipated to resolve legal complications with international treaties, to achieve international consensus and political will, and to acquire requisite extensive resources for surveillance and enforcement. Analysis of results of research on seabird avoidance methods reveals that the most reliable comparisons of the efficacy of alternative strategies are from comparing the effectiveness of methods tested in a single experiment. Benefits from standardizing the reporting of seabird by-catch rates to account for seabird abundance are described. To provide the most precise inputs for seabird population models, estimates of seabird mortality in longline fisheries should account for seabird falloff from hooks before hauling, delayed mortality of seabirds caught but freed from gear, and mortality caused by hooks discarded in offal.

Fisheries: Decline of Pacific tuna populations exaggerated?

Abstract: industrial fisheries in the Pacific Ocean and elsewhere since the 1950s. In their analysis of Japanese longline-fishery catchper-unit-effort (CPUE) data, Myers and Worm conclude that the community (species-aggregated) biomass of large pelagic fish, mainly tunas, was reduced by 80% during the first 15 years of exploitation and is now at 10% of pre-industrial levels. We show here that an assumption critical to this conclusion — namely, that Japanese longline CPUE acts as an accurate index of community biomass — is invalid. Our results indicate that biomass decline and fishing impacts are much less severe than is claimed by Myers and Worm. Interpretation of the species-aggregated CPUE as an index of community biomass rests on the assumption that catchability (a coefficient specifying the proportionality between CPUE and abundance) is constant across species and over time. The former is unrealistic because, among other things, the species have different depth distributions and hence different vulnerability to longline gear. The evolution of tuna longline fisheries in all oceans has seen changes in fishing strategies (and hence catchability) as different species have been targeted. In the early 1960s, Japanese longliners changed from targeting albacore (Thunnus alalunga) and yellowfin (T. albacares) for the canned-tuna market to bigeye (T. obesus) and yellowfin tuna for the Japanese sashimi market. Japanese longline CPUE for albacore declined rapidly not because of declining albacore abundance, but because of this change in species targeting. By contrast, Taiwanese longliners have consistently targeted albacore in subequatorial waters of all oceans, and their CPUE provides a better index of albacore abundance. These results show that CPUE has declined by 50% over 40 years in the South Pacific, but they do not replicate the rapid and much larger decline in CPUE in the 1960s evident in the Japanese data (Fig.1a). The Myers and Worm analysis excludes data from the equatorial Pacific, where the highest catches are taken and which is the core habitat for tropical tunas. When these data are included, yellowfin-tuna CPUE in the western Pacific is seen to decline by 70% over 50 years, during which time annual catches by longline and other methods increase from insignificant levels in the early 1950s to more than 400,000 tonnes by the late 1990s (Fig. 1b). By contrast, the CPUE for bigeye tuna has been stable for over 40 years, despite continuously increasing catch (Fig. 1c). Changes in fishing strategies designed to target the deeper-swimming and higher-value bigeye tuna occurred during the 1970s (ref. 3), making it unlikely that CPUE accurately reflects changes in abundance for either species unless it is adjusted to account for the shift in targeting. Unadjusted Japanese longline CPUE tends to overestimate abundance decline for yellowfin tuna and underestimate abundance decline for bigeye tuna. Stock assessments rely on a range of data in addition to CPUE, including catch, size composition, tagging and biological data. When stock-assessment models 6 that consider all the available data are applied to Pacific tunas, fishery-induced declines in abundance during the 1950s and 1960s of the magnitude proposed by Myers and Worm are found to be extremely unlikely. Moreover, where declines do occur, they are not, as claimed by Myers and Worm, due exclusively to fishing. It is impossible, for example, under conventional populationdynamics theory to attribute the pre-1970 decline in yellowfin CPUE to fishing at a time when the total catches were less than one-tenth of today’s catches. In summary, the trends in catches and CPUE (Fig. 1) and the results of stock-assessment modelling show that the basic assumption of Myers and Worm that CPUE is proportional to brief communications arising

Fibropapillomatosis in stranded green turtles (chelonia mydas) from the eastern united states (1980–98): trends and associations with environmental factors

Abstract: We examined data collected by the US Sea Turtle Stranding and Salvage Network on 4,328 green turtles (Chelonia mydas) found dead or debilitated (i.e., stranded) in the eastern half of the USA from Massachusetts to Texas during the period extending from 1980 to 1998. Fibropapillomatosis (FP) was reported only on green turtles in the southern half of Florida (south of 29°N latitude). Within this region, 22.6% (682/3,016) of the turtles had tumors. Fibropapillomatosis was more prevalent in turtles found along the western (Gulf) coast of Florida (51.9%) than in turtles found along the eastern (Atlantic) coast of Florida (11.9%) and was more prevalent in turtles found in inshore areas (38.9%) than in turtles found in offshore areas (14.6%). A high prevalence of FP corresponded to coastal waters characterized by habitat degradation and pollution, a large extent of shallow-water area, and low wave energy, supporting speculation that one or more of these factors could serve as an environmental cofactor in the exp...

Patterns of Chinook salmon migration and residency in the Salmon River estuary (Oregon)

Abstract: We examined variations in the juvenile life history of fall-spawning Chinook salmon, Oncorhynchus tshawytscha, for evidence of change in estuarine residency and migration patterns following the removal of dikes from 145 ha of former salt-marsh habitat in the Salmon River estuary (Oregon). Mark-recapture studies and abundance patterns in the estuary during 2000e2002 describe the following life-history types among Chinook salmon: (1) fry disperse throughout the estuary, and many move into restored tidalmarsh habitats in the early spring soon after emergence; (2) juveniles reside in freshwater for several months, enter the estuary in June or July, and remain for (a) a few weeks or (b) several months before entering the ocean; and (3) juveniles enter the ocean later in the fall after an extended period of rearing upriver and/or in the estuary. The absence of fry migrants in the estuary during spring and early summer in 1975e1977 d a period that precedes restoration of any of the diked marshes d and the extensive use of marsh habitats by fry and fingerlings AprileJuly, 2000e2002 indicate that wetland restoration has increased estuarine rearing opportunities for juvenile Chinook salmon. Year-to-year patterns of estuarine rearing and abundance by juvenile salmon may be influenced by flood and drought conditions that affected adult spawner distribution and over-winter survival of salmon eggs. However, persistent changes in spawner distribution since 1975e1977, including the concentration of hatchery strays in the lower river, may account for the large proportion of fry that now disperse into the estuary soon after emergence in the spring. Although few of these earliest migrants survived to the river mouth, many fry and fingerlings from mid- and upper-basin spawning areas distributed throughout a greater portion of the estuary during the spring and summer and migrated to the ocean over a broader range of sizes and time periods than thirty years ago. The results suggest that wetland recovery has expanded life history variation in the Salmon River population by allowing greater expression of estuarine-resident behaviors. 2005 Elsevier Ltd. All rights reserved.

Optimizing the removal of small fish passage barriers

Abstract: Removing small artificial barriers that hinder upstream migrations of fish is a major problem in riparian habitat restoration. Because of budgetary limitations, it is necessary to prioritize barrier removal and repair decisions. These have usually been based on scoring and ranking procedures, which, although simple to use, can be very inefficient in terms of increasing the amount of accessible instream habitat. We develop a novel decision-making approach, based on integer programming techniques, which optimizes repair and removal decisions. Results show based on real datasets of barrier culverts located in Washington State that scoring and ranking is over 25% below the optimum on average and a full 100% below in the worst case, producing no net habitat gain whatsoever. This is compared to a dynamic programming method that was able to find optimal solutions in less than a second, even for problems with up to several hundred variables, and a heuristic method, which found solutions with less than a 1% average optimality gap in even less time.

Forecasting climate‐induced changes in the survival of Snake River spring/summer Chinook salmon (Oncorhynchus tshawytscha)

Abstract: Effective conservation and management of natural resources requires accurate predictions of ecosystem responses to future climate change, but environmental science has largely failed to produce these reliable forecasts. The future response of Pacific salmon (Oncorhynchus spp.) to a changing environment and continued anthropogenic disturbance is of particular interest to the public because of their high economic, social, and cultural value. While numerous retrospective analyses show a strong correlation between past changes in the ocean environment and salmon production within the north Pacific, these correlations rarely make good predictions. Using a Bayesian time-series model to make successive 1-yr-ahead forecasts, we predicted changes in the ocean survival of Snake River spring/summer chinook salmon (O. tshawytscha) from indices of coastal ocean upwelling with a high degree of certainty (R2 = 0.71). Furthermore, another form of the dynamic times-series model that used all of the available data indicated an even stronger coupling between smolt-to-adult survival and ocean upwelling in the spring and fall (R2 = 0.96). This suggests that management policies directed at conserving this threatened stock of salmon need to explicitly address the important role of the ocean in driving future salmon survival.

Evaluation of average length as an estimator of exploitation status for the Florida coral-reef fish community

Abstract: Simulation and empirical analyses were conducted to evaluate the utility and robustness of average length (Lbar) of animals in the exploited population as an estimator of fishing mortality (F), and therefore as an indicator of exploitation status for Florida coral-reef fish. Simulation results showed that the Lbar estimator of fishing mortality was relatively insensitive to trends in recruitment, and demonstrated favourable properties for detecting statistical differences between sustainable and non-sustainable rates of exploitation. Rates of F estimated from fishery-dependent size composition data were comparable to F estimates from catch-and-effort time-series. Average length was also estimated from fishery-independent diver surveys for 22 species in the exploited snapperegrouper complex. A majority of snapperegrouper species are currently fished unsustainably in the Florida Keys, though overfishing appears most severe for long-lived, slow-growing fish.

Linking oceanic food webs to coastal production and growth rates of Pacific salmon (Oncorhynchus spp.), using models on three scales

Abstract: Three independent modeling methods—a nutrient-phytoplankton–zooplankton (NPZ) model (NEMURO), a food web model (Ecopath/Ecosim), and a bioenergetics model for pink salmon (Oncorhynchus gorbuscha)—were linked to examine the relationship between seasonal zooplankton dynamics and annual food web productive potential for Pacific salmon feeding and growing in the Alaskan subarctic gyre ecosystem. The linked approach shows the importance of seasonal and ontogenetic prey switching for zooplanktivorous pink salmon, and illustrates the critical role played by lipid-rich forage species, especially the gonatid squid Berryteuthis anonychus, in connecting zooplankton to upper trophic level production in the subarctic North Pacific. The results highlight the need to uncover natural mechanisms responsible for accelerated late winter and early spring growth of salmon, especially with respect to climate change and zooplankton bloom timing. Our results indicate that the best match between modeled and observed high-seas pink salmon growth requires the inclusion of two factors into bioenergetics models: (1) decreasing energetic foraging costs for salmon as zooplankton are concentrated by the spring shallowing of pelagic mixed-layer depth and (2) the ontogenetic switch of salmon diets from zooplankton to squid. Finally, we varied the timing and input levels of coastal salmon production to examine effects of density-dependent coastal processes on ocean feeding; coastal processes that place relatively minor limitations on salmon growth may delay the seasonal timing of ontogenetic diet shifts and thus have a magnified effect on overall salmon growth rates.