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Journal ArticleDOI

A dimer method for finding saddle points on high dimensional potential surfaces using only first derivatives

Graeme Henkelman, +1 more
- 05 Oct 1999 - 
- Vol. 111, Iss: 15, pp 7010-7022
TLDR
In this article, a method for finding saddle points without knowledge of the final state of the transition is described, which only makes use of first derivatives of the potential energy and is therefore applicable in situations where second derivatives are too costly or too tedious to evaluate, for example, in plane wave based density functional theory calculations.
Abstract
The problem of determining which activated (and slow) transitions can occur from a given initial state at a finite temperature is addressed. In the harmonic approximation to transition state theory this problem reduces to finding the set of low lying saddle points at the boundary of the potential energy basin associated with the initial state, as well as the relevant vibrational frequencies. Also, when full transition state theory calculations are carried out, it can be useful to know the location of the saddle points on the potential energy surface. A method for finding saddle points without knowledge of the final state of the transition is described. The method only makes use of first derivatives of the potential energy and is, therefore, applicable in situations where second derivatives are too costly or too tedious to evaluate, for example, in plane wave based density functional theory calculations. It is also designed to scale efficiently with the dimensionality of the system and can be applied to very large systems when empirical or semiempirical methods are used to obtain the atomic forces. The method can be started from the potential minimum representing the initial state, or from an initial guess closer to the saddle point. An application to Al adatom diffusion on an Al(100) surface described by an embedded atom method potential is presented. A large number of saddle points were found for adatom diffusion and dimer/vacancy formation. A surprisingly low energy four atom exchange process was found as well as processes indicative of local hex reconstruction of the surface layer.

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Citations
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Journal ArticleDOI

QUANTUM ESPRESSO: a modular and open-source software project for quantum simulations of materials

TL;DR: QUANTUM ESPRESSO as discussed by the authors is an integrated suite of computer codes for electronic-structure calculations and materials modeling, based on density functional theory, plane waves, and pseudopotentials (norm-conserving, ultrasoft, and projector-augmented wave).
Journal ArticleDOI

Improved tangent estimate in the nudged elastic band method for finding minimum energy paths and saddle points

TL;DR: An improved way of estimating the local tangent in the nudged elastic band method for finding minimum energy paths is presented, and examples given where a complementary method, the dimer method, is used to efficiently converge to the saddle point.
Journal ArticleDOI

Advances in methods and algorithms in a modern quantum chemistry program package

TL;DR: Specific developments discussed include fast methods for density functional theory calculations, linear scaling evaluation of energies, NMR chemical shifts and electric properties, fast auxiliary basis function methods for correlated energies and gradients, equation-of-motion coupled cluster methods for ground and excited states, geminal wavefunctions, embedding methods and techniques for exploring potential energy surfaces.
Journal ArticleDOI

Optimization methods for finding minimum energy paths.

TL;DR: If a highly accurate MEP is desired, it is found to be more efficient to descend from the saddle to the minima than to use a chain-of-states method with many images.
Journal ArticleDOI

Spectroscopic Observation of Dual Catalytic Sites During Oxidation of CO on a Au/TiO2 Catalyst

TL;DR: Infrared-kinetic measurements indicate that O-O bond scission is activated by the formation of a CO-O2 complex at dual Ti-Au sites at the Au/TiO2 interface, and density functional theory calculations confirm this model.
References
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Journal ArticleDOI

Iterative minimization techniques for ab initio total-energy calculations: molecular dynamics and conjugate gradients

TL;DR: In this article, the authors describe recent technical developments that have made the total-energy pseudopotential the most powerful ab initio quantum-mechanical modeling method presently available, and they aim to heighten awareness of the capabilities of the method in order to stimulate its application to as wide a range of problems in as many scientific disciplines as possible.
Journal ArticleDOI

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TL;DR: In this paper, it was shown that an effective mass which depends on the direction of the path through the saddle point in configuration space determines the Arrhenius expression's effective frequency.
Journal ArticleDOI

Hyperdynamics: Accelerated Molecular Dynamics of Infrequent Events

TL;DR: In this article, a general method for accelerating the molecular-dynamics (MD) simulation of infrequent events in solids is derived, and the diffusion mechanism of a 10-atom Ag cluster on the Ag(111) surface using a $220\ensuremath{\mu}\mathrm{s}$ hyper-MD simulation.
Journal ArticleDOI

On finding transition states

TL;DR: In this paper, an algorithm for locating transition states on a potential energy surface is described, which makes explicit use of the second derivative matrix of the potential surface, is able to "walk uphill" from the minimum on a possible surface to the transition state essentially automatically.
Journal ArticleDOI

Interstitial Atomic Diffusion Coefficients

TL;DR: In this paper, an attempt is made to interpret the temperature independent factor of the previously determined diffusion coefficients of interstitial solute atoms in metals, and the associated entropy factors are consistent with the theoretical range.
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