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Open AccessJournal ArticleDOI

An expanded tool kit for the auxin‐inducible degron system in budding yeast

Magdalena E. Morawska, +1 more
- 01 Sep 2013 - 
- Vol. 30, Iss: 9, pp 341-351
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TLDR
The construction of a series of vectors is reported that significantly enhance the versatility of this auxin‐inducible degron (AID) system in Saccharomyces cerevisiae and provides evidence for a general usefulness of the system.
Abstract
Fusion of inducible degradation signals, so-called degrons, to cellular proteins is an elegant method of controlling protein levels in vivo. Recently, a degron system relying on the plant hormone auxin has been described for use in yeast and vertebrate cells. We now report the construction of a series of vectors that significantly enhance the versatility of this auxin-inducible degron (AID) system in Saccharomyces cerevisiae. We have minimized the size of the degron and appended a series of additional epitope tags, allowing detection by commercial antibodies or fluorescence microscopy. The vectors are compatible with PCR-based genomic tagging strategies, allow for C- or N-terminal fusion of the degron, and provide a range of selection markers. Application to a series of yeast proteins, including essential replication factors, provides evidence for a general usefulness of the system.

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Citations
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Strand-specific ChIP-seq at DNA breaks distinguishes ssDNA versus dsDNA binding and refutes single-stranded nucleosomes.

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Mitochondrial-derived compartments facilitate cellular adaptation to amino acid stress

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BRD2 Compartmentalizes the Accessible Genome

TL;DR: In this paper , the authors show that the bromodomain and extraterminal (BET) family scaffold protein BRD2 promotes spatial mixing and compartmentalization of active chromatin after cohesin loss.
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A New Tool for Inducible Gene Expression in Caenorhabditis elegans.

TL;DR: It is demonstrated that the glucocorticoid receptor LBD confers ligand-gated control of a heterologous gene expression system (Q system) and the DAF-16 transcription factor in Caenorhabditis elegans.
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Auxin-Inducible Depletion of the Essentialome Suggests Inhibition of TORC1 by Auxins and Inhibition of Vrg4 by SDZ 90-215, a Natural Antifungal Cyclopeptide.

TL;DR: AID-tagging can efficiently model the action of SMIs before they are discovered and can facilitate SMI discovery, indicating that AID- tagged strains can be useful for SMI screening.
References
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Journal ArticleDOI

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae

TL;DR: A new set of plasmids that serve as templates for the PCR synthesis of fragments that allow a variety of gene modifications that should further facilitate the rapid analysis of gene function in S. cerevisiae.
Book ChapterDOI

Getting started with yeast.

TL;DR: The yeast Saccharomyces cerevisiae is now recognized as a model system representing a simple eukaryote whose genome can be easily manipulated and made particularly accessible to gene cloning and genetic engineering techniques.
Journal ArticleDOI

An auxin-based degron system for the rapid depletion of proteins in nonplant cells

TL;DR: The auxin-inducible degron (AID) system allowed rapid and reversible degradation of target proteins in response to auxin and enabled us to generate efficient conditional mutants of essential proteins in yeast as well as cell lines derived from chicken, mouse, hamster, monkey and human cells, thus offering a powerful tool to control protein expression and study protein function.
Journal ArticleDOI

Epitope tagging of yeast genes using a PCR‐based strategy: more tags and improved practical routines

TL;DR: In the yeast Saccharomyces cerevisiae, molecular biological techniques have been developed that use a simple PCR‐based strategy to introduce epitope tags to chromosomal loci to produce PCR amplificable modules.
Journal ArticleDOI

Control of spontaneous and damage-induced mutagenesis by SUMO and ubiquitin conjugation

TL;DR: These findings assign a function to SUMO during S phase and demonstrate how ubiquitin and SUMO, by regulating the accuracy of replication and repair, contribute to overall genomic stability.
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