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Architectural design influences the diversity and structure of the built environment microbiome

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TLDR
The observed relationship between building design and airborne bacterial diversity suggests that the authors can manage indoor environments, altering through building designand operation the community of microbial species that potentially colonize the human microbiome during their time indoors.
Abstract
Buildings are complex ecosystems that house trillions of microorganisms interacting with each other, with humans and with their environment. Understanding the ecological and evolutionary processes that determine the diversity and composition of the built environment microbiome—the community of microorganisms that live indoors—is important for understanding the relationship between building design, biodiversity and human health. In this study, we used high-throughput sequencing of the bacterial 16S rRNA gene to quantify relationships between building attributes and airborne bacterial communities at a health-care facility. We quantified airborne bacterial community structure and environmental conditions in patient rooms exposed to mechanical or window ventilation and in outdoor air. The phylogenetic diversity of airborne bacterial communities was lower indoors than outdoors, and mechanically ventilated rooms contained less diverse microbial communities than did window-ventilated rooms. Bacterial communities in indoor environments contained many taxa that are absent or rare outdoors, including taxa closely related to potential human pathogens. Building attributes, specifically the source of ventilation air, airflow rates, relative humidity and temperature, were correlated with the diversity and composition of indoor bacterial communities. The relative abundance of bacteria closely related to human pathogens was higher indoors than outdoors, and higher in rooms with lower airflow rates and lower relative humidity. The observed relationship between building design and airborne bacterial diversity suggests that we can manage indoor environments, altering through building design and operation the community of microbial species that potentially colonize the human microbiome during our time indoors.

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Journal ArticleDOI

Waste not, want not: why rarefying microbiome data is inadmissible.

TL;DR: It is advocated that investigators avoid rarefying altogether and supported statistical theory is provided that simultaneously accounts for library size differences and biological variability using an appropriate mixture model.
Journal ArticleDOI

Dispersal in microbes: fungi in indoor air are dominated by outdoor air and show dispersal limitation at short distances

TL;DR: Results show that at the local level, outdoor air fungi dominate the patterning of indoor air, providing additional support for the growing evidence that dispersal limitation, even on small geographic scales, is a key process in structuring the often-observed distance–decay biogeographic pattern in microbial communities.
Journal ArticleDOI

Regulation of the immune system by biodiversity from the natural environment: An ecosystem service essential to health

TL;DR: It is suggested that the requirement for microbial input from the environment to drive immunoregulation is a major component of the beneficial effect of green space, and a neglected ecosystem service that is essential for the authors' well-being.
Journal ArticleDOI

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

TL;DR: In this paper, the authors discuss emerging strategies for microbial community analysis that complement and expand traditional metagenomic profiling, such as novel DNA sequencing strategies for identifying strain-level microbial variation and community temporal dynamics; measuring multiple 'omic' data types that better capture community functional activity; and combining multiple forms of omic data in an integrated framework.
Journal ArticleDOI

Microbes in the neonatal intensive care unit resemble those found in the gut of premature infants

TL;DR: This first matched fecal-BE time series analysis of two preterm VLBW neonates housed in a neonatal intensive care unit (NICU) over the first month of life reveals a suite of genes that confer resistance to antibiotics and sterilizing agents, which likely offer a competitive advantage in the NICU environment.
References
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