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In Posidonia oceanica cadmium induces changes in DNA methylation and chromatin patterning

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TLDR
The data demonstrate that Cd perturbs the DNA methylation status through the involvement of a specific methyltransferase, linked to nuclear chromatin reconfiguration likely to establish a new balance of expressed/repressed chromatin.
Abstract
In mammals, cadmium is widely considered as a non-genotoxic carcinogen acting through a methylation-dependent epigenetic mechanism. Here, the effects of Cd treatment on the DNA methylation patten are examined together with its effect on chromatin reconfiguration in Posidonia oceanica. DNA methylation level and pattern were analysed in actively growing organs, under short- (6 h) and long- (2 d or 4 d) term and low (10 mM) and high (50 mM) doses of Cd, through a Methylation-Sensitive Amplification Polymorphism technique and an immunocytological approach, respectively. The expression of one member of the CHROMOMETHYLASE (CMT) family, a DNA methyltransferase, was also assessed by qRT-PCR. Nuclear chromatin ultrastructure was investigated by transmission electron microscopy. Cd treatment induced a DNA hypermethylation, as well as an up-regulation of CMT, indicating that de novo methylation did indeed occur. Moreover, a high dose of Cd led to a progressive heterochromatinization of interphase nuclei and apoptotic figures were also observed after long-term treatment. The data demonstrate that Cd perturbs the DNA methylation status through the involvement of a specific methyltransferase. Such changes are linked to nuclear chromatin reconfiguration likely to establish a new balance of expressed/repressed chromatin. Overall, the data show an epigenetic basis to the mechanism underlying Cd toxicity in plants.

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Mutations conferring self-compatibility in Prunus species: From deletions and insertions to epigenetic alterations

TL;DR: Self-incompatible Prunus species show a gametophytic self-incompatibility system, but self-compatibility is an interesting horticultural trait in these fruit tree species.
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Determination of DNA methylation associated with Acer rubrum (red maple) adaptation to metals: analysis of global DNA modifications and methylation-sensitive amplified polymorphism.

TL;DR: Metal contamination is seen to affect methylation of cytosine residues in CCGG motifs in A. rubrum populations that were analyzed, and other genotypes from a different metal‐contaminated site within the same region appear to be recalcitrant to metal‐induced DNA alterations.
Journal ArticleDOI

Clade classification of monolignol biosynthesis gene family members reveals target genes to decrease lignin in Lolium perenne.

TL;DR: Functional subtyping of phylogenetic clades represents a valuable tool for studies investigating monolignol biosynthesis genes in other monocot species, and is proposed to prioritise paralogues within multigene families and certain SNPs within these genes for developing genotyping assays or increasing power in association mapping studies.
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Cadmium causes hepatopathy by changing the status of DNA methylation in the metabolic pathway.

TL;DR: Go enrichment analysis showed that the genes were enriched in the biological process of "response to stimulus," and KEGG analysis revealed that metabolic pathways, like MAPK, PI3K-Akt and cAMP, had the largest number of enriched genes.
References
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R Core Team
- 01 Jan 2014 - 
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Journal ArticleDOI

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