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In Posidonia oceanica cadmium induces changes in DNA methylation and chromatin patterning

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TLDR
The data demonstrate that Cd perturbs the DNA methylation status through the involvement of a specific methyltransferase, linked to nuclear chromatin reconfiguration likely to establish a new balance of expressed/repressed chromatin.
Abstract
In mammals, cadmium is widely considered as a non-genotoxic carcinogen acting through a methylation-dependent epigenetic mechanism. Here, the effects of Cd treatment on the DNA methylation patten are examined together with its effect on chromatin reconfiguration in Posidonia oceanica. DNA methylation level and pattern were analysed in actively growing organs, under short- (6 h) and long- (2 d or 4 d) term and low (10 mM) and high (50 mM) doses of Cd, through a Methylation-Sensitive Amplification Polymorphism technique and an immunocytological approach, respectively. The expression of one member of the CHROMOMETHYLASE (CMT) family, a DNA methyltransferase, was also assessed by qRT-PCR. Nuclear chromatin ultrastructure was investigated by transmission electron microscopy. Cd treatment induced a DNA hypermethylation, as well as an up-regulation of CMT, indicating that de novo methylation did indeed occur. Moreover, a high dose of Cd led to a progressive heterochromatinization of interphase nuclei and apoptotic figures were also observed after long-term treatment. The data demonstrate that Cd perturbs the DNA methylation status through the involvement of a specific methyltransferase. Such changes are linked to nuclear chromatin reconfiguration likely to establish a new balance of expressed/repressed chromatin. Overall, the data show an epigenetic basis to the mechanism underlying Cd toxicity in plants.

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References
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VISTA: computational tools for comparative genomics

TL;DR: The VISTA family of tools created to assist biologists in carrying out comparative analysis of DNA sequences is described and capabilities of the site are illustrated by the analysis of a 180 kb interval on human chromosome 5 that encodes for the kinesin family member 3A (KIF3A) protein.
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Sugar Sensing and Signaling in Plants: Conserved and Novel Mechanisms

TL;DR: In this article, the experimental amenability of yeast as a unicellular model system has enabled the discovery of multiple sugar sensors and signaling pathways, and a central role for hexokinase (HXK) as conserved glucose sensor.
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Calcium channels activated by hydrogen peroxide mediate abscisic acid signalling in guard cells

TL;DR: Activation of Ca2+-permeable channels in the plasma membrane of Arabidopsis guard cells by hydrogen peroxide indicates that ABA-induced H2O2 production and the H 2O 2-activated Ca2-activated channels are important mechanisms for A BA-induced stomatal closing.
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Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor

TL;DR: This article showed that over-expression of the cDNA encoding DREB1A in transgenic plants activated the expression of many of these stress tolerance genes under normal growing conditions and resulted in improved tolerance to drought, salt loading, and freezing.
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