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Into the Evening: Complex Interactions in the Arabidopsis circadian clock

He Huang, +1 more
- 01 Oct 2016 - 
- Vol. 32, Iss: 10, pp 674-686
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TLDR
New progress is uncovered uncovering how the EC contributes to the circadian network through the integration of environmental inputs and the direct regulation of key clock genes.
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This article is published in Trends in Genetics.The article was published on 2016-10-01 and is currently open access. It has received 124 citations till now. The article focuses on the topics: Circadian clock & CLOCK.

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Citations
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Journal ArticleDOI

The evening complex coordinates environmental and endogenous signals in Arabidopsis

TL;DR: It is found that the ability of the EC to bind targets genome-wide depends on temperature, and co-occurrence of phytochrome B at multiple sites where the EC is bound provides a mechanism for integrating environmental information.
Journal ArticleDOI

Perception and signalling of light and temperature cues in plants

TL;DR: The sharing of mechanisms of action for two distinct environmental cues is to some extent unexpected, as it renders these responses mutually dependent, and many ecological contexts in which such a mutual influence could be beneficial.
Journal ArticleDOI

Circadian Rhythms in Plants

TL;DR: The current understanding of the clock and its interactions with light and temperature-signaling pathways is discussed and different clock gene alleles that have been implicated in the domestication of important staple crops are described.
Journal ArticleDOI

A mobile ELF4 delivers circadian temperature information from shoots to roots

TL;DR: In this paper, the authors found a prevalent temperature-dependent function of the Arabidopsis clock component EARLY FLOWERING 4 (ELF4) in the root clock and established a shoot-to-root dialogue that sets the pace of the clock in roots.
References
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Journal ArticleDOI

Phytozome: a comparative platform for green plant genomics

TL;DR: Phytozome provides a view of the evolutionary history of every plant gene at the level of sequence, gene structure, gene family and genome organization, while at the same time providing access to the sequences and functional annotations of a growing number of complete plant genomes.
Journal ArticleDOI

Plant Circadian Clocks Increase Photosynthesis, Growth, Survival, and Competitive Advantage

TL;DR: It is shown that a substantial photosynthetic advantage is conferred by correct matching of the circadian clock period with that of the external light-dark cycle, which explains why plants gain advantage from circadian control.
Journal ArticleDOI

Reciprocal Regulation Between TOC1 and LHY/CCA1 Within the Arabidopsis Circadian Clock

TL;DR: It is shown that both proteins bind to a region in the TOC1 promoter that is critical for its clock regulation, and these interactions form a loop critical for clock function inArabidopsis.
Journal ArticleDOI

Peroxiredoxins are conserved markers of circadian rhythms

TL;DR: It is shown that oxidation–reduction cycles of peroxiredoxin proteins constitute a universal marker for circadian rhythms in all domains of life, by characterizing their oscillations in a variety of model organisms and exploring the interconnectivity between these metabolic cycles and transcription–translation feedback loops of the clockwork in each system.
Related Papers (5)
Frequently Asked Questions (16)
Q1. What is the role of the EC in the regulation of flowering?

Because PIF4 and PIF5 are also required for 265 warm-night induced early flowering [76], it is possible that the EC indirectly regulates 266 flowering by modulating expression of the PIFs or through repressing transcriptional 267 activation through the ELF3-PIF4 interaction. 

The circadian clock and light signaling pathways co-218 regulate hypocotyl elongation to maintain daily growth rhythms in Arabidopsis, with the 219 maximal growth rate at dawn in short days [19, 58]. 

In eukaryotes, circadian oscillators are cell-autonomous 389 pacemakers with a period of ~24 hours composed of mostly transcription factors. 

ELF3 is a key factor antagonizing light input into the clock, as 160.CC-BY-NC-ND 4.0 International licensea certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. 

In addition, a 152 B-box containing transcription regulator that regulates photomorphogenesis, BBX19, 153 physically interacts with COP1 and ELF3 to promote the COP1-dependent degradation of 154 ELF3 [45]. 

The function of the EC as an integrator of light inputs is consistent with protein-protein 167 interactions between the EC and numerous components of the light signaling pathways 168 [14, 38, 43, 44, 50, 51]. 

CCA1 binds to the promoter of ELF3 in 100 the morning to repress its expression, supporting the genetic data showing ELF3 is 101 negatively regulated by CCA1 [33]. 

Several new ELF3-associated proteins 296 were also identified, including a family of nuclear kinases (MUT9-LIKE KINASEs, MLK1 to 297 4), which regulate circadian period and flowering in long days [50, 92]. 

E. and P.H. Quail, PIF4, a phytochrome-interacting bHLH factor, functions as a 609 negative regulator of phytochrome B signaling in Arabidopsis. 

318319Concluding Remarks and Future Perspectives 320Evidence generated from combined genetic, biochemical and molecular approaches has 321 established that the EC functions as an entry point for integrating multiple clock inputs 322 to modulate circadian rhythms and clock output pathways. 

In turn, the EC 88 regulates the transcription of other key clock genes (discussed below) to maintain 89 proper circadian rhythms [13, 16-18]. 

One molecular 252 mechanism has been found through studies of ELF3, which functions as a substrate 253 adaptor for the COP1-dependent degradation of GI protein [43, 71] (Figure 2B). 

Temperature-179 entrained and dark-grown elf3 mutant seedlings are arrhythmic, supporting an essential 180 role for ELF3 in integrating temperature cues [53]. 

T., et al., Ambient temperature signal feeds into the circadian clock 554 transcriptional circuitry through the EC nighttime repressor in Arabidopsis thaliana. 

Together with the fact that ELF3 regulates the expression of TOC1 and its target 303 PRR9 [23, 25, 39-41], the TOC1-ELF3 interaction suggests additional mechanisms of EC-304 mediated regulation within the circadian clock. 

visible light signaling pathways directly regulate the abundance of the 155 EC through transcriptional and post-translational mechanisms.